Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | DJ564_RS27950 | Genome accession | NZ_CP029482 |
| Coordinates | 5926500..5926907 (-) | Length | 135 a.a. |
| NCBI ID | WP_010467585.1 | Uniprot ID | A0A024EFQ4 |
| Organism | Pseudomonas sp. 31-12 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5921500..5931907
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DJ564_RS27930 (DJ564_27930) | - | 5922310..5925252 (+) | 2943 | WP_109634908.1 | DUF748 domain-containing protein | - |
| DJ564_RS27935 (DJ564_27935) | - | 5925252..5925551 (+) | 300 | WP_109634910.1 | DUF2845 domain-containing protein | - |
| DJ564_RS27945 (DJ564_27945) | - | 5925834..5926187 (-) | 354 | WP_109634911.1 | BON domain-containing protein | - |
| DJ564_RS27950 (DJ564_27950) | pilA | 5926500..5926907 (-) | 408 | WP_010467585.1 | pilin | Machinery gene |
| DJ564_RS27955 (DJ564_27955) | pilB | 5927133..5928833 (+) | 1701 | WP_109634913.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| DJ564_RS27960 (DJ564_27960) | pilC | 5928836..5930053 (+) | 1218 | WP_109634915.1 | type II secretion system F family protein | Machinery gene |
| DJ564_RS27965 (DJ564_27965) | pilD | 5930055..5930927 (+) | 873 | WP_109634917.1 | A24 family peptidase | Machinery gene |
| DJ564_RS27970 (DJ564_27970) | coaE | 5930924..5931547 (+) | 624 | WP_109634918.1 | dephospho-CoA kinase | - |
| DJ564_RS27975 (DJ564_27975) | yacG | 5931544..5931744 (+) | 201 | WP_109634920.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 13770.94 Da Isoelectric Point: 8.1079
>NTDB_id=293092 DJ564_RS27950 WP_010467585.1 5926500..5926907(-) (pilA) [Pseudomonas sp. 31-12]
MNTQKGFTLIELLIVVAIIGILATFALPAYSKYQARAKVTAGLAEITALKVPFEDLMNSGTNPDLTKVGGTATTSNCTTT
AAGVATDGTGTIGCTILNAPGPVLSKTITLTRSLTGWTCATTVAQEYAPKGCTGV
MNTQKGFTLIELLIVVAIIGILATFALPAYSKYQARAKVTAGLAEITALKVPFEDLMNSGTNPDLTKVGGTATTSNCTTT
AAGVATDGTGTIGCTILNAPGPVLSKTITLTRSLTGWTCATTVAQEYAPKGCTGV
Nucleotide
Download Length: 408 bp
>NTDB_id=293092 DJ564_RS27950 WP_010467585.1 5926500..5926907(-) (pilA) [Pseudomonas sp. 31-12]
ATGAATACTCAAAAAGGTTTTACCCTGATCGAACTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGGCTTACTCGAAGTATCAAGCGCGTGCCAAGGTGACGGCCGGCCTGGCAGAGATCACGGCGTTGAAAGTCCCGTTTG
AGGACCTTATGAACTCCGGCACCAATCCGGATCTGACGAAGGTTGGCGGAACCGCCACGACCTCCAATTGCACGACCACG
GCAGCGGGTGTCGCGACTGATGGTACCGGCACCATCGGTTGCACGATTCTCAACGCTCCAGGTCCGGTCTTGAGCAAAAC
CATTACCCTGACGCGCTCTCTGACTGGCTGGACTTGCGCTACCACAGTCGCTCAGGAGTACGCGCCTAAAGGCTGCACAG
GCGTCTGA
ATGAATACTCAAAAAGGTTTTACCCTGATCGAACTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGGCTTACTCGAAGTATCAAGCGCGTGCCAAGGTGACGGCCGGCCTGGCAGAGATCACGGCGTTGAAAGTCCCGTTTG
AGGACCTTATGAACTCCGGCACCAATCCGGATCTGACGAAGGTTGGCGGAACCGCCACGACCTCCAATTGCACGACCACG
GCAGCGGGTGTCGCGACTGATGGTACCGGCACCATCGGTTGCACGATTCTCAACGCTCCAGGTCCGGTCTTGAGCAAAAC
CATTACCCTGACGCGCTCTCTGACTGGCTGGACTTGCGCTACCACAGTCGCTCAGGAGTACGCGCCTAAAGGCTGCACAG
GCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
50 |
100 |
0.511 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
47.445 |
100 |
0.481 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
43.357 |
100 |
0.459 |
| pilA | Vibrio cholerae strain A1552 |
43.357 |
100 |
0.459 |
| pilA | Vibrio cholerae C6706 |
43.357 |
100 |
0.459 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
43.704 |
100 |
0.437 |
| pilA | Pseudomonas aeruginosa PAK |
39.597 |
100 |
0.437 |
| comP | Acinetobacter baylyi ADP1 |
35.374 |
100 |
0.385 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
36.879 |
100 |
0.385 |
| pilA2 | Legionella pneumophila str. Paris |
37.778 |
100 |
0.378 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.037 |
100 |
0.37 |