Detailed information NTG0293095

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DJ564_RS27965
• Genome accession: NZ_CP029482
• Coordinates: 5930055..5930927 (+)
• Length: 290 a.a.
• NCBI ID: WP_109634917.1
• Uniprot ID: -
• Organism: Pseudomonas sp. 31-12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5925055..5935927

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DJ564_RS27935 (DJ564_27935)	-	5925252..5925551 (+)	300	WP_109634910.1	DUF2845 domain-containing protein	-
DJ564_RS27945 (DJ564_27945)	-	5925834..5926187 (-)	354	WP_109634911.1	BON domain-containing protein	-
DJ564_RS27950 (DJ564_27950)	pilA	5926500..5926907 (-)	408	WP_010467585.1	pilin	Machinery gene
DJ564_RS27955 (DJ564_27955)	pilB	5927133..5928833 (+)	1701	WP_109634913.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DJ564_RS27960 (DJ564_27960)	pilC	5928836..5930053 (+)	1218	WP_109634915.1	type II secretion system F family protein	Machinery gene
DJ564_RS27965 (DJ564_27965)	pilD	5930055..5930927 (+)	873	WP_109634917.1	A24 family peptidase	Machinery gene
DJ564_RS27970 (DJ564_27970)	coaE	5930924..5931547 (+)	624	WP_109634918.1	dephospho-CoA kinase	-
DJ564_RS27975 (DJ564_27975)	yacG	5931544..5931744 (+)	201	WP_109634920.1	DNA gyrase inhibitor YacG	-
DJ564_RS27980 (DJ564_27980)	-	5931748..5931963 (-)	216	WP_033054332.1	hypothetical protein	-
DJ564_RS27985 (DJ564_27985)	-	5932027..5932716 (-)	690	WP_109634921.1	energy-coupling factor ABC transporter permease	-
DJ564_RS27990 (DJ564_27990)	-	5933360..5933593 (+)	234	WP_109634923.1	DUF2790 domain-containing protein	-
DJ564_RS27995 (DJ564_27995)	-	5933602..5934870 (-)	1269	WP_109634924.1	OprD family porin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32135.51 Da
• Isoelectric Point: 8.2653

>NTDB_id=293095 DJ564_RS27965 WP_109634917.1 5930055..5930927(+) (pilD) [Pseudomonas sp. 31-12]
MPLNDILILYPLVFVGIALAVGLLVGSFLNVVVWRLPKMLHREWRLQAHDVLGVPPEAPGPAYNLMLPHSHCPHCDHQIR
AWENIPLLSYLFLRGRCSNCATAISKRYPLTELACGLLSAFIAWHFGFGWQACMVLVLTWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHEALWGAVAGYMTLWTVFWLFKLLTGKDGIGHGDFKLLAMIGAWGGWQILPLTLLLSSLVG
AIIGVILLRLRNAKTSTPIPFGPFLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=293095 DJ564_RS27965 WP_109634917.1 5930055..5930927(+) (pilD) [Pseudomonas sp. 31-12]
ATGCCCTTGAACGACATCCTGATCCTCTATCCGCTGGTGTTCGTAGGCATCGCCCTGGCGGTCGGCCTGCTGGTTGGCAG
CTTCCTCAACGTGGTGGTTTGGCGCCTGCCGAAAATGCTCCACCGCGAATGGCGGCTGCAAGCCCATGACGTGTTGGGCG
TGCCGCCCGAGGCGCCGGGCCCGGCCTATAACCTGATGCTGCCTCATTCCCACTGCCCGCATTGCGACCATCAAATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTATCTGTTTCTACGGGGGCGATGCTCGAACTGCGCCACGGCGATCAGCAAGCG
TTATCCGCTGACTGAACTGGCCTGTGGTCTGCTCTCGGCGTTTATTGCCTGGCATTTCGGCTTCGGCTGGCAGGCCTGCA
TGGTGCTGGTGCTGACCTGGGGCTTGCTGGCCATGAGCCTGATCGACGCCGAGCACCAACTGCTGCCGGATGTACTGGTG
TTGCCGCTGCTGTGGCTGGGGTTGATCGTCAACAGCTTCGGGTTGTTCGTGTCATTGCATGAGGCGTTGTGGGGCGCGGT
GGCCGGTTATATGACGTTGTGGACGGTGTTCTGGCTGTTCAAGCTGCTCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTGCTGGCCATGATCGGCGCTTGGGGCGGCTGGCAGATATTGCCCCTGACCCTTCTCCTTTCATCCCTTGTGGGG
GCCATCATCGGCGTGATTTTGCTGCGCCTGCGCAACGCAAAAACTTCGACACCGATCCCCTTCGGACCCTTTCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.408	97.931	0.503
pilD	Vibrio campbellii strain DS40M4	49.645	97.241	0.483
pilD	Acinetobacter baumannii D1279779	48.905	94.483	0.462
pilD	Acinetobacter nosocomialis M2	48.905	94.483	0.462
pilD	Neisseria gonorrhoeae MS11	47.407	93.103	0.441