Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   LPC_RS10035 Genome accession   NC_009494
Coordinates   2228476..2228889 (-) Length   137 a.a.
NCBI ID   WP_011946812.1    Uniprot ID   -
Organism   Legionella pneumophila str. Corby     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2223476..2233889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC_RS10020 (LPC_1366) letS 2223790..2226522 (+) 2733 WP_011946809.1 two-component system sensor histidine kinase LetS Regulator
  LPC_RS10025 (LPC_1367) - 2226620..2227864 (+) 1245 WP_011946810.1 6-phosphofructokinase -
  LPC_RS10030 (LPC_1368) pilA2 2227861..2228274 (-) 414 WP_011946811.1 pilin Machinery gene
  LPC_RS10035 (LPC_1369) pilA2 2228476..2228889 (-) 414 WP_011946812.1 pilin Machinery gene
  LPC_RS10040 (LPC_1370) - 2229192..2229509 (+) 318 WP_011946813.1 BolA family protein -
  LPC_RS10045 (LPC_1371) - 2229584..2231005 (+) 1422 WP_011946814.1 APC family permease -
  LPC_RS10050 (LPC_1372) - 2231136..2232566 (-) 1431 WP_011946815.1 cellulase family glycosylhydrolase -
  LPC_RS10055 (LPC_1373) kdsB 2232812..2233564 (-) 753 WP_011946816.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LPC_RS10060 (LPC_1374) - 2233561..2233740 (-) 180 WP_010947637.1 Trm112 family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14173.23 Da        Isoelectric Point: 4.9429

>NTDB_id=28242 LPC_RS10035 WP_011946812.1 2228476..2228889(-) (pilA2) [Legionella pneumophila str. Corby]
MRQKGFTLIELMIVVAIIGILAAIAIPAYQDYTIRARVSEGLQMASSAKLAVSETAITNNALPTTQAETGYESPAPTANV
TGIAIGANGVITITYTPAAGDGTIIMTPTLDANNGDVTWNCTGGSLSPKYRPASCRP

Nucleotide


Download         Length: 414 bp        

>NTDB_id=28242 LPC_RS10035 WP_011946812.1 2228476..2228889(-) (pilA2) [Legionella pneumophila str. Corby]
ATGAGACAAAAGGGTTTTACATTAATTGAATTGATGATAGTCGTAGCGATTATCGGTATTTTGGCAGCAATCGCTATACC
AGCCTATCAAGATTACACCATACGAGCTCGTGTAAGCGAGGGGCTACAGATGGCAAGCTCAGCCAAACTAGCCGTATCTG
AAACGGCTATTACAAATAATGCGTTACCAACTACTCAGGCTGAAACGGGCTACGAGTCTCCTGCCCCCACGGCTAATGTG
ACAGGTATTGCAATAGGTGCTAACGGCGTGATTACCATCACGTATACCCCTGCAGCAGGTGATGGTACGATTATTATGAC
TCCTACACTGGATGCCAACAACGGTGATGTTACCTGGAACTGCACCGGTGGTAGCTTATCGCCTAAATACCGGCCTGCCA
GTTGCAGACCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Pilin (bacterial filament) (Pilin)

(35-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

86.131

100

0.861
  pilA2 Legionella pneumophila str. Paris

85.401

100

0.854
  pilA Ralstonia pseudosolanacearum GMI1000

47.205

100

0.555
  comP Acinetobacter baylyi ADP1

48.98

100

0.526
  pilE Neisseria gonorrhoeae MS11

38.217

100

0.438
  pilA Haemophilus influenzae 86-028NP

41.429

100

0.423
  pilE Neisseria gonorrhoeae strain FA1090

37.179

100

0.423
  pilA/pilA1 Eikenella corrodens VA1

38.514

100

0.416
  pilA Pseudomonas aeruginosa PAK

38.255

100

0.416
  pilA Glaesserella parasuis strain SC1401

40.58

100

0.409
  pilA Vibrio parahaemolyticus RIMD 2210633

44.094

92.701

0.409
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.259

98.54

0.387
  pilA/pilAII Pseudomonas stutzeri DSM 10701

38.806

97.81

0.38

Multiple sequence alignment