Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   CS557_RS01615 Genome accession   NZ_CP024632
Coordinates   346955..347380 (+) Length   141 a.a.
NCBI ID   WP_412778901.1    Uniprot ID   -
Organism   Acinetobacter junii strain lzh-X15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341955..352380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS01595 (CS557_01600) - 343263..344153 (+) 891 WP_099947986.1 metal-dependent hydrolase -
  CS557_RS01600 (CS557_01605) - 344332..344922 (+) 591 WP_099947987.1 LemA family protein -
  CS557_RS01605 (CS557_01610) - 344958..346004 (+) 1047 WP_099947988.1 TPM domain-containing protein -
  CS557_RS01610 (CS557_01615) - 345998..346561 (+) 564 WP_099947989.1 TPM domain-containing protein -
  CS557_RS01615 (CS557_01620) pilA/pilAI 346955..347380 (+) 426 WP_412778901.1 pilin Machinery gene
  CS557_RS01620 (CS557_01625) - 348881..349297 (-) 417 WP_099947991.1 pilin -
  CS557_RS01625 (CS557_01630) - 349494..350915 (-) 1422 WP_099947992.1 O-antigen ligase family protein -
  CS557_RS01630 (CS557_01635) tfpZ 351161..351895 (+) 735 WP_099947993.1 TfpX/TfpZ family type IV pilin accessory protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14375.61 Da        Isoelectric Point: 8.1020

>NTDB_id=254579 CS557_RS01615 WP_412778901.1 346955..347380(+) (pilA/pilAI) [Acinetobacter junii strain lzh-X15]
MQKGFTLIELMIVVAIIGILAAIAIPAYQDYIAKSQATSGLAEISPAKTQFEIAINEGKIPSLTSTDAGFIGVTAAGGQY
CTVALLGSSPAFTGIQCTLKNGNATKINGKTLALNRDATTGLWSCSTGGGLEAKYKPGACS

Nucleotide


Download         Length: 426 bp        

>NTDB_id=254579 CS557_RS01615 WP_412778901.1 346955..347380(+) (pilA/pilAI) [Acinetobacter junii strain lzh-X15]
ATGCAAAAGGGTTTTACTCTTATTGAATTAATGATCGTTGTAGCAATCATCGGTATCTTGGCTGCTATTGCGATTCCTGC
GTATCAAGATTACATTGCTAAATCTCAGGCGACTTCAGGTTTAGCTGAAATTTCACCTGCTAAGACTCAATTTGAGATTG
CAATAAATGAAGGTAAAATTCCTTCTCTTACTTCTACCGATGCAGGCTTTATTGGTGTAACAGCAGCTGGTGGTCAATAC
TGTACCGTTGCCCTATTGGGTTCATCACCAGCATTCACTGGTATTCAATGTACGCTTAAAAATGGTAATGCGACTAAAAT
CAATGGTAAAACACTTGCTTTAAACCGTGATGCTACAACAGGTTTATGGTCTTGTTCAACTGGTGGTGGTTTAGAAGCTA
AATATAAACCAGGTGCTTGTTCATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(33-140)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

63.83

100

0.638
  pilA/pilAII Pseudomonas stutzeri DSM 10701

55.797

97.872

0.546
  pilA Acinetobacter baumannii strain A118

49.286

99.291

0.489
  pilA2 Legionella pneumophila strain ERS1305867

47.857

99.291

0.475
  pilA2 Legionella pneumophila str. Paris

47.143

99.291

0.468
  pilA Pseudomonas aeruginosa PAK

44.295

100

0.468
  pilA Vibrio cholerae C6706

48.092

92.908

0.447
  pilA Vibrio cholerae strain A1552

48.092

92.908

0.447
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

48.092

92.908

0.447
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.696

100

0.44
  pilA/pilA1 Eikenella corrodens VA1

38.158

100

0.411
  pilA Vibrio parahaemolyticus RIMD 2210633

44.444

89.362

0.397
  comP Acinetobacter baylyi ADP1

37.5

100

0.383
  pilE Neisseria gonorrhoeae MS11

33.962

100

0.383

Multiple sequence alignment