Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   SYNCC9605_RS00105 Genome accession   NC_007516
Coordinates   21023..22105 (-) Length   360 a.a.
NCBI ID   WP_011363063.1    Uniprot ID   -
Organism   Synechococcus sp. CC9605     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16023..27105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNCC9605_RS00080 (Syncc9605_0014) - 17067..17588 (+) 522 WP_011363058.1 RNA recognition motif domain-containing protein -
  SYNCC9605_RS00085 (Syncc9605_0015) dusA 17602..18597 (-) 996 WP_011363059.1 tRNA dihydrouridine(20/20a) synthase DusA -
  SYNCC9605_RS00090 (Syncc9605_0016) msrB 18638..19141 (+) 504 WP_011363060.1 peptide-methionine (R)-S-oxide reductase MsrB -
  SYNCC9605_RS00095 (Syncc9605_0017) - 19113..20381 (+) 1269 WP_011363061.1 NAD(P)/FAD-dependent oxidoreductase -
  SYNCC9605_RS14210 (Syncc9605_0018) - 20356..21003 (-) 648 WP_011363062.1 type II secretion system F family protein -
  SYNCC9605_RS00105 (Syncc9605_0019) pilT 21023..22105 (-) 1083 WP_011363063.1 type IV pilus twitching motility protein PilT Machinery gene
  SYNCC9605_RS00110 (Syncc9605_0021) - 22116..23716 (-) 1601 Protein_19 GspE/PulE family protein -
  SYNCC9605_RS15305 (Syncc9605_0022) - 23807..23965 (-) 159 WP_257929660.1 general secretion pathway protein GspE -
  SYNCC9605_RS00115 (Syncc9605_0023) grpE 24056..24733 (+) 678 WP_011363064.1 nucleotide exchange factor GrpE -
  SYNCC9605_RS00120 (Syncc9605_0024) dnaJ 24733..25869 (+) 1137 WP_011363065.1 molecular chaperone DnaJ -
  SYNCC9605_RS00125 (Syncc9605_0025) - 25866..26093 (+) 228 WP_011363066.1 sulfurtransferase TusA family protein -
  SYNCC9605_RS00130 (Syncc9605_0026) rsgA 26119..27000 (+) 882 WP_198002491.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 39423.10 Da        Isoelectric Point: 5.4742

>NTDB_id=24938 SYNCC9605_RS00105 WP_011363063.1 21023..22105(-) (pilT) [Synechococcus sp. CC9605]
MDLMIEALMEQLVQGGGSDLHLATGQPPYGRFSGELRPMTDRPLAEEECNKLIFSMLNNSQRKTLEQTWELDCAYGLKGV
ARFRVNVYRQKGSYAACLRALGSTIPSVELLNLPPVVLETSARPRGLVLVTGPTGSGKTTTLAALLDLINHTRSEHILTI
EDPIEFVYQSDKSLVHQRQLNEDTRSFANALRAALREDPNVILVGEMRDLEMIQLAVSAAETGHLVFGALYTSSAAQTVD
RMVDVFPPEQQTQIRVQLSGSLVAVFCQTLCRRQNPSEGQFGRVMAQEILINTPGPGTANMIREGKTAQLYSQIQTGTEQ
GMQTLEKALANLVLNGDVSRAEAMGKASKPGELQRLIGEI

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=24938 SYNCC9605_RS00105 WP_011363063.1 21023..22105(-) (pilT) [Synechococcus sp. CC9605]
ATGGATCTGATGATCGAAGCCTTGATGGAACAACTGGTGCAGGGCGGTGGCAGTGATCTGCACCTGGCCACCGGTCAACC
GCCCTACGGCCGCTTCAGTGGTGAACTGCGTCCGATGACGGACCGACCCCTGGCCGAGGAGGAATGCAACAAACTGATCT
TCTCGATGTTGAACAACAGCCAGCGCAAGACGCTGGAGCAGACCTGGGAACTGGACTGCGCCTACGGCCTCAAGGGCGTT
GCACGCTTCCGCGTGAACGTCTACCGCCAGAAAGGCAGCTATGCCGCCTGCCTGCGAGCCCTTGGCAGCACGATTCCCAG
CGTTGAACTGCTGAACCTGCCTCCTGTGGTGCTGGAGACCAGCGCGCGGCCCCGGGGTCTGGTGCTGGTGACGGGTCCAA
CAGGCTCAGGGAAGACAACAACCCTGGCGGCTCTGTTGGATCTCATCAATCACACCCGCAGCGAACACATCCTCACGATC
GAAGACCCGATCGAATTCGTGTACCAGAGCGACAAAAGCCTGGTGCACCAACGCCAGCTGAACGAAGACACCCGCAGCTT
CGCCAACGCCTTGCGCGCCGCCCTGCGGGAGGACCCGAACGTGATCCTGGTGGGTGAGATGCGGGATCTGGAGATGATTC
AACTGGCGGTGAGTGCCGCCGAAACCGGACATCTCGTCTTCGGAGCCTTGTATACCAGCTCCGCCGCCCAGACCGTGGAC
CGCATGGTCGACGTCTTCCCACCGGAACAACAGACGCAGATCCGTGTCCAGCTCTCGGGCAGTTTGGTCGCTGTGTTCTG
CCAGACCCTTTGCCGGCGTCAGAACCCGTCAGAAGGACAGTTCGGTCGGGTGATGGCCCAGGAGATCCTGATCAACACAC
CTGGACCTGGCACCGCCAACATGATCCGCGAGGGGAAAACAGCCCAGCTCTATTCCCAAATCCAGACGGGGACAGAACAA
GGTATGCAGACCCTGGAGAAAGCCTTGGCCAACCTTGTGCTCAATGGGGATGTATCCCGCGCCGAAGCGATGGGCAAAGC
CAGCAAACCAGGCGAATTGCAGCGCTTGATCGGTGAAATCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(119-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

52.537

93.056

0.489
  pilT Pseudomonas stutzeri DSM 10701

51.642

93.056

0.481
  pilT Legionella pneumophila strain Lp02

50.442

94.167

0.475
  pilT Legionella pneumophila strain ERS1305867

50.442

94.167

0.475
  pilT Acinetobacter baumannii D1279779

49.133

96.111

0.472
  pilT Acinetobacter baumannii strain A118

49.133

96.111

0.472
  pilT Acinetobacter nosocomialis M2

49.133

96.111

0.472
  pilT Acinetobacter baylyi ADP1

48.844

96.111

0.469
  pilT Neisseria meningitidis 8013

49.558

94.167

0.467
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.68

94.722

0.461
  pilT Neisseria gonorrhoeae MS11

49.401

92.778

0.458
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

47.953

95

0.456
  pilT Vibrio cholerae strain A1552

47.953

95

0.456
  pilU Pseudomonas stutzeri DSM 10701

37.11

98.056

0.364

Multiple sequence alignment