Detailed information NTG0248400

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: CN538_RS22855
• Genome accession: NZ_CP023559
• Coordinates: 2455245..2455760 (+)
• Length: 171 a.a.
• NCBI ID: WP_242495014.1
• Uniprot ID: -
• Organism: Salinicola tamaricis strain F01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2450245..2460760

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CN538_RS25240	pilM	2450732..2451238 (+)	507	WP_340638100.1	pilus assembly protein PilM	-
CN538_RS25245	pilM	2451150..2451782 (+)	633	WP_340638335.1	type IV pilus assembly protein PilM	-
CN538_RS11275	-	2451779..2452162 (+)	384	WP_242495009.1	hypothetical protein	-
CN538_RS22840	-	2452135..2452356 (+)	222	WP_242495010.1	PilN domain-containing protein	-
CN538_RS11280	-	2452353..2453024 (+)	672	WP_106419482.1	type 4a pilus biogenesis protein PilO	-
CN538_RS11285	-	2453021..2453572 (+)	552	WP_106419483.1	pilus assembly protein PilP	-
CN538_RS11290	-	2453653..2454426 (+)	774	WP_164999583.1	AMIN domain-containing protein	-
CN538_RS22845	pilQ	2454520..2454801 (+)	282	WP_242495011.1	secretin and TonB N-terminal domain-containing protein	Machinery gene
CN538_RS22850	-	2454823..2455047 (-)	225	WP_242495013.1	hypothetical protein	-
CN538_RS22855	pilQ	2455245..2455760 (+)	516	WP_242495014.1	hypothetical protein	Machinery gene
CN538_RS11300	aroK	2455760..2456314 (+)	555	WP_106419485.1	shikimate kinase AroK	-
CN538_RS11305	aroB	2456353..2457465 (+)	1113	WP_106419486.1	3-dehydroquinate synthase	-

Sequence

Protein

• Length: 171 a.a.
• Molecular weight: 18983.51 Da
• Isoelectric Point: 4.1895

>NTDB_id=248400 CN538_RS22855 WP_242495014.1 2455245..2455760(+) (pilQ) [Salinicola tamaricis strain F01]
MLIDLELRALESEGKSQTISQPKVITANQRTAVIKQGQEVPYQEASSSGATTTEFKEAVLSLEVTPQITPDDRIIMDLRV
NNDDISDTRFDGAPAIDTNEIQTQVLVDNGETVVLGGILTSEQLHTLFKTPFLGDIPVIGQLFRYTQESNEKVELLIFIT
PKIIEDRLAIR

Nucleotide

• Length: 516 bp

>NTDB_id=248400 CN538_RS22855 WP_242495014.1 2455245..2455760(+) (pilQ) [Salinicola tamaricis strain F01]
GTGCTGATCGACCTGGAGCTGCGCGCGCTGGAGAGCGAGGGCAAGAGCCAGACCATCTCCCAGCCCAAGGTGATCACCGC
CAACCAGCGCACCGCGGTGATCAAGCAGGGGCAGGAGGTGCCTTACCAGGAGGCGTCCTCCAGCGGTGCCACCACCACCG
AGTTCAAGGAGGCGGTGCTGTCGCTGGAGGTGACCCCGCAGATCACCCCGGACGACCGCATCATCATGGATCTGCGGGTC
AACAACGACGACATCTCGGACACCCGCTTCGATGGCGCGCCGGCGATCGACACCAACGAGATCCAGACCCAGGTGCTGGT
CGACAACGGCGAGACCGTGGTGCTGGGCGGCATTCTCACCTCGGAGCAGCTGCATACGCTGTTCAAGACGCCCTTCCTCG
GCGACATCCCGGTGATCGGGCAGCTGTTCCGCTATACCCAGGAGAGCAATGAAAAGGTAGAATTGCTGATCTTCATTACG
CCCAAGATCATCGAGGACAGACTGGCCATTCGCTGA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (9-165)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Legionella pneumophila strain Lp02	57.059	99.415	0.567
pilQ	Legionella pneumophila strain ERS1305867	57.059	99.415	0.567
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	56.024	97.076	0.544
pilQ	Vibrio cholerae strain A1552	56.024	97.076	0.544
pilQ	Vibrio campbellii strain DS40M4	54.819	97.076	0.532
pilQ	Pseudomonas aeruginosa PAK	50.296	98.83	0.497
pilQ	Acinetobacter baumannii strain A118	48.837	100	0.491
pilQ	Acinetobacter baumannii D1279779	48.837	100	0.491
comQ	Acinetobacter baylyi ADP1	48.538	100	0.485
comE	Haemophilus influenzae 86-028NP	44.048	98.246	0.433
pilQ	Neisseria gonorrhoeae strain FA1090	44.048	98.246	0.433
comE	Haemophilus influenzae Rd KW20	44.048	98.246	0.433
comE	Glaesserella parasuis strain SC1401	44.242	96.491	0.427
pilQ	Neisseria meningitidis MC58	43.114	97.661	0.421
pilQ	Neisseria meningitidis M1080	43.114	97.661	0.421