Detailed information
Bioinformatically predicted
Overview
| Name | pilQ | Type | Machinery gene |
| Locus tag | CN538_RS22845 | Genome accession | NZ_CP023559 |
| Coordinates | 2454520..2454801 (+) | Length | 93 a.a. |
| NCBI ID | WP_242495011.1 | Uniprot ID | - |
| Organism | Salinicola tamaricis strain F01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2449520..2459801
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CN538_RS25240 | pilM | 2450732..2451238 (+) | 507 | WP_340638100.1 | pilus assembly protein PilM | - |
| CN538_RS25245 | pilM | 2451150..2451782 (+) | 633 | WP_340638335.1 | type IV pilus assembly protein PilM | - |
| CN538_RS11275 | - | 2451779..2452162 (+) | 384 | WP_242495009.1 | hypothetical protein | - |
| CN538_RS22840 | - | 2452135..2452356 (+) | 222 | WP_242495010.1 | PilN domain-containing protein | - |
| CN538_RS11280 | - | 2452353..2453024 (+) | 672 | WP_106419482.1 | type 4a pilus biogenesis protein PilO | - |
| CN538_RS11285 | - | 2453021..2453572 (+) | 552 | WP_106419483.1 | pilus assembly protein PilP | - |
| CN538_RS11290 | - | 2453653..2454426 (+) | 774 | WP_164999583.1 | AMIN domain-containing protein | - |
| CN538_RS22845 | pilQ | 2454520..2454801 (+) | 282 | WP_242495011.1 | secretin and TonB N-terminal domain-containing protein | Machinery gene |
| CN538_RS22850 | - | 2454823..2455047 (-) | 225 | WP_242495013.1 | hypothetical protein | - |
| CN538_RS22855 | pilQ | 2455245..2455760 (+) | 516 | WP_242495014.1 | hypothetical protein | Machinery gene |
| CN538_RS11300 | aroK | 2455760..2456314 (+) | 555 | WP_106419485.1 | shikimate kinase AroK | - |
| CN538_RS11305 | aroB | 2456353..2457465 (+) | 1113 | WP_106419486.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 93 a.a. Molecular weight: 10186.67 Da Isoelectric Point: 10.0155
>NTDB_id=248399 CN538_RS22845 WP_242495011.1 2454520..2454801(+) (pilQ) [Salinicola tamaricis strain F01]
MTLDFQDIPVRDVLSIIAQVSGLNVVASDSVQGNVTLNLVDVPWDQALDLVLQSRGLAARRTGDVMVVGRPASWPACSAR
PWRVVSSRSSWRR
MTLDFQDIPVRDVLSIIAQVSGLNVVASDSVQGNVTLNLVDVPWDQALDLVLQSRGLAARRTGDVMVVGRPASWPACSAR
PWRVVSSRSSWRR
Nucleotide
Download Length: 282 bp
>NTDB_id=248399 CN538_RS22845 WP_242495011.1 2454520..2454801(+) (pilQ) [Salinicola tamaricis strain F01]
GTGACGCTCGACTTTCAGGACATCCCGGTGCGGGATGTGCTCTCGATCATCGCCCAGGTCTCCGGGCTCAACGTGGTCGC
CAGCGATAGCGTTCAGGGCAATGTCACCCTCAATCTGGTCGACGTGCCCTGGGATCAGGCGCTCGATCTGGTGCTGCAGA
GCCGCGGTCTGGCGGCGCGGCGCACCGGCGACGTCATGGTGGTGGGCCGGCCGGCGAGCTGGCCAGCCTGCAGCGCCAGA
CCCTGGAGAGTCGTGAGCAGTCGCAGCAGCTGGCGCCGCTGA
GTGACGCTCGACTTTCAGGACATCCCGGTGCGGGATGTGCTCTCGATCATCGCCCAGGTCTCCGGGCTCAACGTGGTCGC
CAGCGATAGCGTTCAGGGCAATGTCACCCTCAATCTGGTCGACGTGCCCTGGGATCAGGCGCTCGATCTGGTGCTGCAGA
GCCGCGGTCTGGCGGCGCGGCGCACCGGCGACGTCATGGTGGTGGGCCGGCCGGCGAGCTGGCCAGCCTGCAGCGCCAGA
CCCTGGAGAGTCGTGAGCAGTCGCAGCAGCTGGCGCCGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilQ | Pseudomonas aeruginosa PAK |
56.25 |
86.022 |
0.484 |
| pilQ | Acinetobacter baumannii strain A118 |
59.091 |
70.968 |
0.419 |
| pilQ | Acinetobacter baumannii D1279779 |
59.091 |
70.968 |
0.419 |
| pilQ | Neisseria gonorrhoeae strain FA1090 |
57.576 |
70.968 |
0.409 |
| pilQ | Neisseria meningitidis M1080 |
57.576 |
70.968 |
0.409 |
| pilQ | Neisseria meningitidis MC58 |
57.576 |
70.968 |
0.409 |
| comQ | Acinetobacter baylyi ADP1 |
56.061 |
70.968 |
0.398 |
| pilQ | Legionella pneumophila strain Lp02 |
50.685 |
78.495 |
0.398 |
| pilQ | Legionella pneumophila strain ERS1305867 |
50.685 |
78.495 |
0.398 |
| pilQ | Vibrio cholerae O1 biovar El Tor strain E7946 |
52.174 |
74.194 |
0.387 |
| pilQ | Vibrio cholerae strain A1552 |
52.174 |
74.194 |
0.387 |
| pilQ | Vibrio campbellii strain DS40M4 |
52.174 |
74.194 |
0.387 |