Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | A6J72_RS06570 | Genome accession | NZ_CP020433 |
| Coordinates | 1309661..1309978 (+) | Length | 105 a.a. |
| NCBI ID | WP_082312041.1 | Uniprot ID | - |
| Organism | Streptococcus intermedius strain FDAARGOS_233 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1304661..1314978
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J72_RS06540 (A6J72_06550) | - | 1304752..1305282 (+) | 531 | WP_003073971.1 | aromatic acid exporter family protein | - |
| A6J72_RS06545 (A6J72_06555) | - | 1305359..1305718 (+) | 360 | WP_003073972.1 | MerR family transcriptional regulator | - |
| A6J72_RS06550 (A6J72_06560) | glnA | 1305757..1307103 (+) | 1347 | WP_082312039.1 | type I glutamate--ammonia ligase | - |
| A6J72_RS06555 (A6J72_06565) | - | 1307325..1307690 (+) | 366 | WP_003075933.1 | DUF1033 family protein | - |
| A6J72_RS06560 (A6J72_06570) | comYA | 1307759..1308700 (+) | 942 | WP_003073980.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| A6J72_RS06565 (A6J72_06575) | comYB | 1308642..1309664 (+) | 1023 | WP_192573659.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| A6J72_RS06570 (A6J72_06580) | comYC | 1309661..1309978 (+) | 318 | WP_082312041.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| A6J72_RS06575 (A6J72_06585) | comYD | 1309938..1310366 (+) | 429 | WP_037582814.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| A6J72_RS06580 (A6J72_06590) | comGE/cglE | 1310338..1310631 (+) | 294 | WP_003073987.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| A6J72_RS06585 (A6J72_06595) | comGF/cglF | 1310615..1311052 (+) | 438 | WP_003073990.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| A6J72_RS06590 (A6J72_06600) | comGG | 1311033..1311359 (+) | 327 | WP_263969846.1 | competence type IV pilus minor pilin ComGG | - |
| A6J72_RS06595 (A6J72_06605) | comYH | 1311450..1312403 (+) | 954 | WP_105255939.1 | class I SAM-dependent methyltransferase | Machinery gene |
| A6J72_RS06600 (A6J72_06610) | - | 1312450..1313649 (+) | 1200 | WP_021003254.1 | acetate kinase | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11708.81 Da Isoelectric Point: 10.1263
>NTDB_id=223011 A6J72_RS06570 WP_082312041.1 1309661..1309978(+) (comYC) [Streptococcus intermedius strain FDAARGOS_233]
MKKIKNLKVKAFTLVEMLVVLLIISVLMLLFVPNLTKQREAVTEKGNAAVVKVVESQAELFEVNHTNEKATLSKLVTEGT
ITDKQAASYKAYYAKHTKETRSVAD
MKKIKNLKVKAFTLVEMLVVLLIISVLMLLFVPNLTKQREAVTEKGNAAVVKVVESQAELFEVNHTNEKATLSKLVTEGT
ITDKQAASYKAYYAKHTKETRSVAD
Nucleotide
Download Length: 318 bp
>NTDB_id=223011 A6J72_RS06570 WP_082312041.1 1309661..1309978(+) (comYC) [Streptococcus intermedius strain FDAARGOS_233]
GTGAAAAAAATTAAAAATTTAAAGGTTAAAGCTTTTACTTTAGTGGAAATGTTGGTCGTGCTTCTAATCATTAGTGTTTT
AATGCTCTTATTTGTGCCGAATTTGACCAAGCAAAGGGAAGCAGTAACAGAAAAAGGAAATGCAGCTGTGGTCAAAGTTG
TAGAGAGCCAAGCGGAACTTTTTGAGGTCAATCATACCAATGAAAAAGCAACGCTTTCAAAATTAGTCACTGAAGGCACG
ATTACAGATAAGCAGGCAGCGTCATATAAGGCTTACTATGCGAAACATACAAAAGAAACTCGTTCTGTTGCAGATTAA
GTGAAAAAAATTAAAAATTTAAAGGTTAAAGCTTTTACTTTAGTGGAAATGTTGGTCGTGCTTCTAATCATTAGTGTTTT
AATGCTCTTATTTGTGCCGAATTTGACCAAGCAAAGGGAAGCAGTAACAGAAAAAGGAAATGCAGCTGTGGTCAAAGTTG
TAGAGAGCCAAGCGGAACTTTTTGAGGTCAATCATACCAATGAAAAAGCAACGCTTTCAAAATTAGTCACTGAAGGCACG
ATTACAGATAAGCAGGCAGCGTCATATAAGGCTTACTATGCGAAACATACAAAAGAAACTCGTTCTGTTGCAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
73.333 |
100 |
0.733 |
| comYC | Streptococcus mutans UA140 |
68.571 |
100 |
0.686 |
| comYC | Streptococcus mutans UA159 |
68.571 |
100 |
0.686 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
67.647 |
97.143 |
0.657 |
| comGC/cglC | Streptococcus mitis SK321 |
67.647 |
97.143 |
0.657 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
65.686 |
97.143 |
0.638 |
| comGC/cglC | Streptococcus pneumoniae D39 |
65.686 |
97.143 |
0.638 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
65.686 |
97.143 |
0.638 |
| comGC/cglC | Streptococcus pneumoniae R6 |
65.686 |
97.143 |
0.638 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
53.846 |
99.048 |
0.533 |
| comYC | Streptococcus suis isolate S10 |
62.921 |
84.762 |
0.533 |