Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   C2I05_RS17335 Genome accession   NZ_CP026039
Coordinates   3283347..3284264 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain PK1_2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3278347..3289264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS17320 (C2I05_17315) trpS 3278928..3279920 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  C2I05_RS17325 (C2I05_17320) oppA 3280664..3282301 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  C2I05_RS17330 (C2I05_17325) oppB 3282408..3283343 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  C2I05_RS17335 (C2I05_17330) amiD 3283347..3284264 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  C2I05_RS17340 (C2I05_17335) oppD 3284269..3285345 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  C2I05_RS17345 (C2I05_17340) oppF 3285347..3286264 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  C2I05_RS17350 (C2I05_17345) yjbB 3286371..3287588 (+) 1218 WP_249852855.1 MFS transporter -
  C2I05_RS17355 (C2I05_17350) yjbC 3287752..3288330 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  C2I05_RS17360 (C2I05_17355) spx 3288511..3288906 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=223010 C2I05_RS17335 WP_003232954.1 3283347..3284264(+) (amiD) [Bacillus subtilis strain PK1_2]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=223010 C2I05_RS17335 WP_003232954.1 3283347..3284264(+) (amiD) [Bacillus subtilis strain PK1_2]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGAATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment