Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | A6J72_RS06595 | Genome accession | NZ_CP020433 |
| Coordinates | 1311450..1312403 (+) | Length | 317 a.a. |
| NCBI ID | WP_105255939.1 | Uniprot ID | - |
| Organism | Streptococcus intermedius strain FDAARGOS_233 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1306450..1317403
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J72_RS06555 (A6J72_06565) | - | 1307325..1307690 (+) | 366 | WP_003075933.1 | DUF1033 family protein | - |
| A6J72_RS06560 (A6J72_06570) | comYA | 1307759..1308700 (+) | 942 | WP_003073980.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| A6J72_RS06565 (A6J72_06575) | comYB | 1308642..1309664 (+) | 1023 | WP_192573659.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| A6J72_RS06570 (A6J72_06580) | comYC | 1309661..1309978 (+) | 318 | WP_082312041.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| A6J72_RS06575 (A6J72_06585) | comYD | 1309938..1310366 (+) | 429 | WP_037582814.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| A6J72_RS06580 (A6J72_06590) | comGE/cglE | 1310338..1310631 (+) | 294 | WP_003073987.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| A6J72_RS06585 (A6J72_06595) | comGF/cglF | 1310615..1311052 (+) | 438 | WP_003073990.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| A6J72_RS06590 (A6J72_06600) | comGG | 1311033..1311359 (+) | 327 | WP_263969846.1 | competence type IV pilus minor pilin ComGG | - |
| A6J72_RS06595 (A6J72_06605) | comYH | 1311450..1312403 (+) | 954 | WP_105255939.1 | class I SAM-dependent methyltransferase | Machinery gene |
| A6J72_RS06600 (A6J72_06610) | - | 1312450..1313649 (+) | 1200 | WP_021003254.1 | acetate kinase | - |
| A6J72_RS06605 (A6J72_06615) | glmS | 1314039..1315853 (+) | 1815 | WP_082312042.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
| A6J72_RS06610 (A6J72_06620) | - | 1316048..1316440 (+) | 393 | WP_003074000.1 | DUF1310 family protein | - |
| A6J72_RS06620 (A6J72_06630) | - | 1316662..1317048 (+) | 387 | WP_082312044.1 | DUF1310 family protein | - |
| A6J72_RS06625 (A6J72_06635) | - | 1317051..1317236 (+) | 186 | WP_082312045.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36000.08 Da Isoelectric Point: 4.6894
>NTDB_id=223015 A6J72_RS06595 WP_105255939.1 1311450..1312403(+) (comYH) [Streptococcus intermedius strain FDAARGOS_233]
MNFEKIEQAYTLLLENIQEIQNALLTNFYDALVEQNGIYLDGKTELATVKKNNEILNSLKLSKEEWRRSYQFLLMKAAQT
EPLQANHQFTPDSIGFIVTFLIDQLSNKEHIDVLEIGSGMGNLAETILNNTKKNVDYLGLELDDLLIDVSASIADVMDAK
VSFVQGDAVRPQVLKKSDVIVSDLPIGYYPDDHIASRYEVASTQEHTYAHHLLMEQSLKYLKPGGYAIFLAPNNLLTSRQ
SQLLKNWLQKYVQIVAMIALPESLFGNAAYAKTIFVLKKQDEQAIQPFVYALTDLQNQAALLTFSEKFQNWRQESEI
MNFEKIEQAYTLLLENIQEIQNALLTNFYDALVEQNGIYLDGKTELATVKKNNEILNSLKLSKEEWRRSYQFLLMKAAQT
EPLQANHQFTPDSIGFIVTFLIDQLSNKEHIDVLEIGSGMGNLAETILNNTKKNVDYLGLELDDLLIDVSASIADVMDAK
VSFVQGDAVRPQVLKKSDVIVSDLPIGYYPDDHIASRYEVASTQEHTYAHHLLMEQSLKYLKPGGYAIFLAPNNLLTSRQ
SQLLKNWLQKYVQIVAMIALPESLFGNAAYAKTIFVLKKQDEQAIQPFVYALTDLQNQAALLTFSEKFQNWRQESEI
Nucleotide
Download Length: 954 bp
>NTDB_id=223015 A6J72_RS06595 WP_105255939.1 1311450..1312403(+) (comYH) [Streptococcus intermedius strain FDAARGOS_233]
ATGAATTTTGAAAAAATTGAACAGGCCTATACACTCCTGTTAGAAAATATCCAAGAAATCCAAAATGCTCTTTTAACGAA
TTTTTATGATGCCTTGGTAGAGCAAAACGGGATTTATCTGGATGGAAAGACAGAGCTAGCCACTGTCAAAAAAAATAATG
AAATACTAAACTCTTTGAAATTAAGTAAAGAAGAATGGCGCAGGAGCTACCAATTTTTACTGATGAAAGCGGCTCAAACG
GAGCCTTTGCAAGCCAATCATCAATTTACTCCGGATTCTATTGGTTTTATCGTAACATTTCTCATTGACCAATTGAGTAA
TAAAGAACATATTGATGTTTTGGAAATTGGTAGCGGAATGGGGAATTTAGCAGAGACCATTCTCAATAATACAAAGAAAA
ATGTGGATTACCTAGGACTAGAATTGGACGATTTGTTAATTGATGTATCAGCTAGCATAGCAGATGTGATGGATGCAAAG
GTTAGTTTTGTACAAGGTGATGCAGTGCGCCCACAAGTATTAAAAAAAAGTGATGTGATTGTTAGCGATTTGCCGATTGG
CTATTATCCGGATGATCACATTGCATCGCGCTATGAAGTGGCTAGTACGCAAGAGCATACCTATGCCCATCATTTGTTAA
TGGAACAATCGCTCAAGTATCTGAAACCAGGCGGTTATGCGATATTTCTTGCGCCAAATAATTTATTAACTAGTAGGCAG
AGTCAATTATTGAAAAATTGGTTGCAAAAGTATGTTCAGATAGTTGCAATGATTGCGTTGCCGGAATCCCTTTTTGGAAA
TGCAGCGTATGCCAAAACAATTTTTGTGCTCAAAAAGCAAGACGAACAAGCTATTCAGCCATTTGTTTATGCTTTGACTG
ATTTACAAAATCAAGCTGCCTTATTGACTTTTAGCGAAAAATTCCAAAATTGGAGGCAAGAAAGTGAAATTTAA
ATGAATTTTGAAAAAATTGAACAGGCCTATACACTCCTGTTAGAAAATATCCAAGAAATCCAAAATGCTCTTTTAACGAA
TTTTTATGATGCCTTGGTAGAGCAAAACGGGATTTATCTGGATGGAAAGACAGAGCTAGCCACTGTCAAAAAAAATAATG
AAATACTAAACTCTTTGAAATTAAGTAAAGAAGAATGGCGCAGGAGCTACCAATTTTTACTGATGAAAGCGGCTCAAACG
GAGCCTTTGCAAGCCAATCATCAATTTACTCCGGATTCTATTGGTTTTATCGTAACATTTCTCATTGACCAATTGAGTAA
TAAAGAACATATTGATGTTTTGGAAATTGGTAGCGGAATGGGGAATTTAGCAGAGACCATTCTCAATAATACAAAGAAAA
ATGTGGATTACCTAGGACTAGAATTGGACGATTTGTTAATTGATGTATCAGCTAGCATAGCAGATGTGATGGATGCAAAG
GTTAGTTTTGTACAAGGTGATGCAGTGCGCCCACAAGTATTAAAAAAAAGTGATGTGATTGTTAGCGATTTGCCGATTGG
CTATTATCCGGATGATCACATTGCATCGCGCTATGAAGTGGCTAGTACGCAAGAGCATACCTATGCCCATCATTTGTTAA
TGGAACAATCGCTCAAGTATCTGAAACCAGGCGGTTATGCGATATTTCTTGCGCCAAATAATTTATTAACTAGTAGGCAG
AGTCAATTATTGAAAAATTGGTTGCAAAAGTATGTTCAGATAGTTGCAATGATTGCGTTGCCGGAATCCCTTTTTGGAAA
TGCAGCGTATGCCAAAACAATTTTTGTGCTCAAAAAGCAAGACGAACAAGCTATTCAGCCATTTGTTTATGCTTTGACTG
ATTTACAAAATCAAGCTGCCTTATTGACTTTTAGCGAAAAATTCCAAAATTGGAGGCAAGAAAGTGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.317 |
99.369 |
0.599 |
| comYH | Streptococcus mutans UA159 |
60 |
99.369 |
0.596 |