Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | B1F84_RS13380 | Genome accession | NZ_CP019770 |
| Coordinates | 2864882..2865319 (+) | Length | 145 a.a. |
| NCBI ID | WP_131691708.1 | Uniprot ID | - |
| Organism | Pseudoalteromonas sp. DL-6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2859882..2870319
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B1F84_RS13360 (B1F84_13365) | ampE | 2861570..2862421 (-) | 852 | WP_131691705.1 | beta-lactamase regulator AmpE | - |
| B1F84_RS13370 (B1F84_13370) | ampD | 2862709..2863254 (-) | 546 | WP_131691706.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| B1F84_RS13375 (B1F84_13375) | nadC | 2863528..2864373 (+) | 846 | WP_131691707.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| B1F84_RS13380 (B1F84_13380) | pilA2 | 2864882..2865319 (+) | 438 | WP_131691708.1 | pilin | Machinery gene |
| B1F84_RS13385 (B1F84_13385) | pilC | 2865386..2866615 (+) | 1230 | WP_131691709.1 | type II secretion system F family protein | Machinery gene |
| B1F84_RS13390 (B1F84_13390) | pilD | 2866855..2867766 (+) | 912 | WP_131691710.1 | A24 family peptidase | Machinery gene |
| B1F84_RS13395 (B1F84_13395) | coaE | 2867769..2868398 (+) | 630 | WP_131691711.1 | dephospho-CoA kinase | - |
| B1F84_RS13400 (B1F84_13400) | pilB | 2868543..2870219 (+) | 1677 | WP_131691712.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 15133.44 Da Isoelectric Point: 7.8124
>NTDB_id=218276 B1F84_RS13380 WP_131691708.1 2864882..2865319(+) (pilA2) [Pseudoalteromonas sp. DL-6]
MQTMTQQNQKGFTLIELMIVVAIIGILAAVALPAYQDYTKRAHVSEGITLAASAKSAVTEYFTSQAVLPKTNAEAGLPAK
ATIKGNAVTSVEVGAAGIITVVYNDKVKTGATLILTPDTTTNAGAITWTCNAGTVEDKYLPANCR
MQTMTQQNQKGFTLIELMIVVAIIGILAAVALPAYQDYTKRAHVSEGITLAASAKSAVTEYFTSQAVLPKTNAEAGLPAK
ATIKGNAVTSVEVGAAGIITVVYNDKVKTGATLILTPDTTTNAGAITWTCNAGTVEDKYLPANCR
Nucleotide
Download Length: 438 bp
>NTDB_id=218276 B1F84_RS13380 WP_131691708.1 2864882..2865319(+) (pilA2) [Pseudoalteromonas sp. DL-6]
ATGCAAACAATGACACAACAAAACCAAAAGGGTTTCACCCTAATTGAATTAATGATTGTAGTAGCAATCATCGGTATTTT
AGCAGCAGTAGCCCTGCCTGCTTATCAGGATTACACAAAACGTGCTCATGTTAGTGAAGGGATTACGCTAGCAGCTTCAG
CAAAATCTGCTGTAACTGAGTACTTCACATCACAAGCTGTTTTACCTAAAACAAATGCTGAAGCTGGGTTACCTGCAAAA
GCTACTATTAAAGGTAATGCAGTAACCTCTGTTGAAGTCGGTGCAGCAGGAATTATCACTGTTGTATACAATGATAAAGT
AAAAACAGGTGCAACACTTATACTCACTCCAGACACTACAACTAACGCTGGAGCTATAACTTGGACATGTAATGCTGGTA
CTGTTGAAGACAAATACCTACCTGCAAACTGTCGTTAA
ATGCAAACAATGACACAACAAAACCAAAAGGGTTTCACCCTAATTGAATTAATGATTGTAGTAGCAATCATCGGTATTTT
AGCAGCAGTAGCCCTGCCTGCTTATCAGGATTACACAAAACGTGCTCATGTTAGTGAAGGGATTACGCTAGCAGCTTCAG
CAAAATCTGCTGTAACTGAGTACTTCACATCACAAGCTGTTTTACCTAAAACAAATGCTGAAGCTGGGTTACCTGCAAAA
GCTACTATTAAAGGTAATGCAGTAACCTCTGTTGAAGTCGGTGCAGCAGGAATTATCACTGTTGTATACAATGATAAAGT
AAAAACAGGTGCAACACTTATACTCACTCCAGACACTACAACTAACGCTGGAGCTATAACTTGGACATGTAATGCTGGTA
CTGTTGAAGACAAATACCTACCTGCAAACTGTCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila strain ERS1305867 |
55.072 |
95.172 |
0.524 |
| pilA2 | Legionella pneumophila str. Paris |
54.348 |
95.172 |
0.517 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
46.835 |
100 |
0.51 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
40.678 |
100 |
0.497 |
| pilE | Neisseria gonorrhoeae MS11 |
44.654 |
100 |
0.49 |
| comP | Acinetobacter baylyi ADP1 |
45.89 |
100 |
0.462 |
| pilA | Vibrio campbellii strain DS40M4 |
42.308 |
100 |
0.455 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.179 |
100 |
0.4 |
| pilA | Haemophilus influenzae 86-028NP |
39.31 |
100 |
0.393 |
| pilA | Haemophilus influenzae Rd KW20 |
37.415 |
100 |
0.379 |
| pilA | Acinetobacter baumannii strain A118 |
37.589 |
97.241 |
0.366 |