Detailed information NTG0218278

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: B1F84_RS13390
• Genome accession: NZ_CP019770
• Coordinates: 2866855..2867766 (+)
• Length: 303 a.a.
• NCBI ID: WP_131691710.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. DL-6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2861855..2872766

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B1F84_RS13370 (B1F84_13370)	ampD	2862709..2863254 (-)	546	WP_131691706.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
B1F84_RS13375 (B1F84_13375)	nadC	2863528..2864373 (+)	846	WP_131691707.1	carboxylating nicotinate-nucleotide diphosphorylase	-
B1F84_RS13380 (B1F84_13380)	pilA2	2864882..2865319 (+)	438	WP_131691708.1	pilin	Machinery gene
B1F84_RS13385 (B1F84_13385)	pilC	2865386..2866615 (+)	1230	WP_131691709.1	type II secretion system F family protein	Machinery gene
B1F84_RS13390 (B1F84_13390)	pilD	2866855..2867766 (+)	912	WP_131691710.1	A24 family peptidase	Machinery gene
B1F84_RS13395 (B1F84_13395)	coaE	2867769..2868398 (+)	630	WP_131691711.1	dephospho-CoA kinase	-
B1F84_RS13400 (B1F84_13400)	pilB	2868543..2870219 (+)	1677	WP_131691712.1	type IV-A pilus assembly ATPase PilB	Machinery gene
B1F84_RS13405 (B1F84_13405)	yacG	2870285..2870515 (+)	231	WP_008466423.1	DNA gyrase inhibitor YacG	-
B1F84_RS13410 (B1F84_13410)	-	2870809..2871273 (-)	465	WP_131691713.1	Spy/CpxP family protein refolding chaperone	-
B1F84_RS13415 (B1F84_13415)	-	2871434..2872120 (+)	687	WP_076919373.1	response regulator	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33407.85 Da
• Isoelectric Point: 8.0693

>NTDB_id=218278 B1F84_RS13390 WP_131691710.1 2866855..2867766(+) (pilD) [Pseudoalteromonas sp. DL-6]
MQSFFIDIISAMQAHLWFYLTTVGLVSLSVGSFLNVVIYRLPLMMQKEWQTECRLLLADELTSPKAKHAPARTNDTFNLV
KPNSCCPKCKAAIKPWQNIPIISWLLLKGKCATCNNPISIRYPSVEAITAILSLVVAYCFGVTEQALLYIVVTWVLVALT
FIDIDHMLLPDQLTLPLLWLALIASVMGYTIAPSDAIIGAACGYLSLWSVFWLFKLITGKEGMGYGDFKLLAVFGALLGW
QSLLTIILLSSVVGAVIGIALLSIQGKDKATPIPFGPYLAIAGWITMLWGSQLQNSYFNFIGY

Nucleotide

• Length: 912 bp

>NTDB_id=218278 B1F84_RS13390 WP_131691710.1 2866855..2867766(+) (pilD) [Pseudoalteromonas sp. DL-6]
ATGCAAAGTTTTTTTATTGATATTATCAGCGCGATGCAGGCCCATTTATGGTTTTATTTGACCACAGTTGGCTTAGTGAG
CTTATCTGTTGGTAGCTTTTTAAATGTAGTGATATACCGCTTGCCGCTAATGATGCAAAAAGAATGGCAAACTGAATGCC
GCTTATTATTAGCCGATGAACTAACCAGCCCAAAGGCTAAACACGCCCCTGCACGAACAAATGACACGTTTAACTTAGTT
AAACCCAACTCATGCTGCCCTAAGTGCAAAGCGGCCATTAAACCTTGGCAAAATATCCCTATAATTAGCTGGCTATTATT
AAAAGGAAAATGCGCAACCTGTAATAACCCAATATCAATTCGTTACCCAAGCGTTGAGGCCATTACTGCTATTTTAAGCC
TAGTGGTTGCTTATTGCTTTGGCGTAACTGAGCAGGCTTTATTGTACATTGTAGTTACTTGGGTATTGGTAGCACTAACT
TTTATTGATATTGACCACATGCTCCTGCCGGATCAGCTTACTTTGCCGCTTTTATGGCTGGCGTTAATAGCCTCAGTTAT
GGGTTATACCATAGCCCCTAGCGATGCCATTATTGGCGCAGCATGTGGCTATTTAAGCTTATGGAGTGTGTTTTGGTTGT
TTAAATTAATAACCGGTAAAGAAGGCATGGGCTATGGCGACTTTAAATTACTGGCGGTGTTTGGCGCATTGCTGGGTTGG
CAATCGTTATTGACCATTATTTTGCTCTCCAGCGTGGTTGGCGCAGTAATTGGCATTGCCCTGCTGAGCATTCAAGGTAA
AGACAAAGCAACACCGATTCCTTTTGGTCCTTATTTAGCAATAGCCGGTTGGATAACTATGCTGTGGGGGTCACAACTAC
AAAACAGCTATTTTAATTTTATTGGCTACTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-139)

• Type IV leader peptidase family (Peptidase_A24) (150-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	51.195	96.7	0.495
pilD	Acinetobacter nosocomialis M2	51.195	96.7	0.495
pilD	Vibrio cholerae strain A1552	52.098	94.389	0.492
pilD	Vibrio campbellii strain DS40M4	50.68	97.03	0.492
pilD	Neisseria gonorrhoeae MS11	45.896	88.449	0.406