Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   B1F84_RS13385 Genome accession   NZ_CP019770
Coordinates   2865386..2866615 (+) Length   409 a.a.
NCBI ID   WP_131691709.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. DL-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2860386..2871615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1F84_RS13360 (B1F84_13365) ampE 2861570..2862421 (-) 852 WP_131691705.1 beta-lactamase regulator AmpE -
  B1F84_RS13370 (B1F84_13370) ampD 2862709..2863254 (-) 546 WP_131691706.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  B1F84_RS13375 (B1F84_13375) nadC 2863528..2864373 (+) 846 WP_131691707.1 carboxylating nicotinate-nucleotide diphosphorylase -
  B1F84_RS13380 (B1F84_13380) pilA2 2864882..2865319 (+) 438 WP_131691708.1 pilin Machinery gene
  B1F84_RS13385 (B1F84_13385) pilC 2865386..2866615 (+) 1230 WP_131691709.1 type II secretion system F family protein Machinery gene
  B1F84_RS13390 (B1F84_13390) pilD 2866855..2867766 (+) 912 WP_131691710.1 A24 family peptidase Machinery gene
  B1F84_RS13395 (B1F84_13395) coaE 2867769..2868398 (+) 630 WP_131691711.1 dephospho-CoA kinase -
  B1F84_RS13400 (B1F84_13400) pilB 2868543..2870219 (+) 1677 WP_131691712.1 type IV-A pilus assembly ATPase PilB Machinery gene
  B1F84_RS13405 (B1F84_13405) yacG 2870285..2870515 (+) 231 WP_008466423.1 DNA gyrase inhibitor YacG -
  B1F84_RS13410 (B1F84_13410) - 2870809..2871273 (-) 465 WP_131691713.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44458.47 Da        Isoelectric Point: 9.4274

>NTDB_id=218277 B1F84_RS13385 WP_131691709.1 2865386..2866615(+) (pilC) [Pseudoalteromonas sp. DL-6]
MSSKEPSKNLDTFQWMGLSARGKKLEGELTGSSIALVKAQLRKQGITPSKVKRKAKPLFGLQSVQKITPKDIALVTRQIA
TMLMAGVPLIQSIEMIGSGSTNKSVSKLMETIGDEVKAGQPLSMALRKHPRYFDDLYCDLVASGEQSGALDKIFDRVALY
KEKSEALKSKIKKAMFYPIAVLVVALIVTSILLIFVVPQFQDIFNGFGAELPAFTLFVIAISEFMQEYWWMALIAVMAFG
YIFKEAHLRSLALRDATDRAILKLPIIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEV
SSGNQMNWAMRNSKIFPDMVVQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIVAMYL
PIFQLGSVI

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=218277 B1F84_RS13385 WP_131691709.1 2865386..2866615(+) (pilC) [Pseudoalteromonas sp. DL-6]
ATGTCATCAAAGGAGCCTTCGAAAAATCTAGACACTTTCCAATGGATGGGATTAAGCGCTAGAGGTAAAAAACTAGAGGG
AGAGCTTACGGGCTCTAGCATTGCATTAGTAAAGGCACAACTTCGTAAACAAGGTATTACTCCTTCCAAAGTAAAACGAA
AAGCAAAACCCTTATTTGGCTTACAAAGTGTACAGAAAATCACTCCAAAAGATATTGCGTTAGTTACGCGACAAATAGCC
ACTATGTTAATGGCGGGTGTACCGCTGATACAATCAATTGAAATGATAGGCTCAGGCTCCACCAATAAAAGCGTAAGTAA
GCTCATGGAAACCATTGGTGATGAGGTTAAAGCCGGTCAACCATTATCAATGGCACTCAGAAAGCACCCCCGTTATTTTG
ATGATTTATATTGCGATTTAGTGGCCTCTGGTGAGCAATCGGGCGCACTGGATAAAATATTTGACCGCGTAGCCCTTTAT
AAAGAAAAATCAGAAGCGCTAAAATCAAAAATCAAAAAGGCCATGTTTTACCCTATTGCGGTATTGGTGGTGGCATTGAT
TGTAACCTCCATACTACTTATTTTTGTAGTACCGCAATTTCAGGATATTTTTAATGGCTTTGGTGCTGAACTGCCTGCCT
TTACCTTATTTGTTATTGCTATTTCTGAATTTATGCAAGAGTACTGGTGGATGGCGCTAATAGCGGTAATGGCATTTGGC
TATATATTTAAAGAAGCCCATTTGAGGAGTTTAGCACTCAGAGATGCCACCGACCGCGCCATACTCAAACTGCCCATTAT
AGGCATGATACTTAATAAAGCAGCGGTAGCACGTTATGCACGTACCCTATCGACCACCTTTGCTGCCGGTGTACCGCTTG
TAGATGCGCTTGATTCTGCTGCAGGTGCCTCCGGTAATGCGGTTTATCGCTATGCTATTTTAGAAATTAAAGCCGAGGTG
AGTTCAGGTAACCAAATGAACTGGGCAATGCGCAACTCTAAAATATTCCCAGATATGGTGGTACAAATGGTCGCCATTGG
TGAAGAGTCAGGATCGCTTGATGGCATGCTGGCAAAAGTGGCTACTATTTACGAACAAGAAGTGGATGACGCCGTAGATG
GCCTATCTAGCCTATTAGAGCCATTAATAATGGCAGTACTTGGTGTATTAGTGGGTGGCTTAATTGTGGCCATGTACTTA
CCTATATTCCAACTAGGTTCAGTTATTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.224

97.066

0.614
  pilC Legionella pneumophila strain ERS1305867

55.335

98.533

0.545
  pilC Acinetobacter baylyi ADP1

54.034

100

0.54
  pilC Acinetobacter baumannii D1279779

55

97.8

0.538
  pilC Vibrio cholerae strain A1552

45.522

98.289

0.447
  pilC Vibrio campbellii strain DS40M4

42.787

100

0.428
  pilG Neisseria meningitidis 44/76-A

44.246

95.599

0.423
  pilG Neisseria gonorrhoeae MS11

43.99

95.599

0.421

Multiple sequence alignment