Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECs_2803 Genome accession   NC_002695
Coordinates   2748921..2749397 (+) Length   158 a.a.
NCBI ID   NP_310830.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli O157:H7 str. Sakai     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2743921..2754397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECs_2797 - 2744086..2744991 (+) 906 NP_310824.1 chemotaxis protein -
  ECs_2798 - 2744988..2746058 (+) 1071 NP_310825.1 phospholipase -
  ECs_2799 - 2746194..2746877 (+) 684 NP_310826.1 hypothetical protein -
  ECs_2800 - 2746893..2747303 (+) 411 NP_310827.1 hypothetical protein -
  ECs_2801 yfjQ 2747524..2748345 (+) 822 NP_310828.1 hypothetical protein -
  ECs_2802 yfjX 2748427..2748906 (+) 480 NP_310829.1 antirestriction protein -
  ECs_2803 radC 2748921..2749397 (+) 477 NP_310830.1 DNA repair protein Machinery gene
  ECs_2804 yeeT 2749460..2749681 (+) 222 NP_310831.1 hypothetical protein -
  ECs_2805 cbeA 2749755..2750123 (+) 369 NP_310832.1 antitoxin of toxin-antitoxin system -
  ECs_2806 yeeV 2750212..2750475 (+) 264 NP_310833.1 toxin of the YeeV-YeeU toxin-antitoxin system -
  ECs_2807 yeeW 2750582..2750776 (+) 195 NP_310834.2 hypothetical protein -
  ECs_2808 - 2751217..2751573 (+) 357 NP_310835.1 hypothetical protein -
  ECs_2809 yeeX 2751674..2752003 (-) 330 NP_310836.2 hypothetical protein -
  ECs_2810 yeeA 2752175..2753233 (-) 1059 NP_310837.1 transporter -
  ECs_2811 sbmC 2753432..2753905 (-) 474 NP_310838.1 DNA gyrase inhibitor -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=21448 ECs_2803 NP_310830.1 2748921..2749397(+) (radC) [Escherichia coli O157:H7 str. Sakai]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=21448 ECs_2803 NP_310830.1 2748921..2749397(+) (radC) [Escherichia coli O157:H7 str. Sakai]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment