Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | PP_RS26545 | Genome accession | NC_002947 |
| Coordinates | 5816943..5817941 (-) | Length | 332 a.a. |
| NCBI ID | WP_049588310.1 | Uniprot ID | - |
| Organism | Pseudomonas putida KT2440 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5811943..5822941
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PP_RS26525 (PP_5089) | argS | 5813080..5814816 (+) | 1737 | WP_010955633.1 | arginine--tRNA ligase | - |
| PP_RS26530 (PP_5090) | - | 5814818..5815516 (+) | 699 | WP_003249122.1 | SPOR domain-containing protein | - |
| PP_RS26535 (PP_5091) | - | 5815607..5816026 (-) | 420 | WP_010955634.1 | NINE protein | - |
| PP_RS26540 (PP_5092) | - | 5816191..5816814 (+) | 624 | WP_010955635.1 | C40 family peptidase | - |
| PP_RS26545 (PP_5093) | pilT | 5816943..5817941 (-) | 999 | WP_049588310.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| PP_RS26550 (PP_5094) | - | 5818007..5818693 (+) | 687 | WP_010955637.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| PP_RS26555 (PP_5095) | proC | 5818732..5819550 (+) | 819 | WP_010955638.1 | pyrroline-5-carboxylate reductase | - |
| PP_RS26560 (PP_5096) | - | 5819561..5820151 (+) | 591 | WP_003249110.1 | YggT family protein | - |
| PP_RS26565 (PP_5097) | metX | 5820251..5821390 (+) | 1140 | WP_010955639.1 | homoserine O-succinyltransferase MetX | - |
| PP_RS26570 (PP_5098) | metW | 5821398..5822018 (+) | 621 | WP_003249106.1 | methionine biosynthesis protein MetW | - |
| PP_RS26575 (PP_5099) | - | 5822041..5822475 (+) | 435 | WP_010955641.1 | DUF4426 domain-containing protein | - |
Sequence
Protein
Download Length: 332 a.a. Molecular weight: 36024.71 Da Isoelectric Point: 7.5270
>NTDB_id=21199 PP_RS26545 WP_049588310.1 5816943..5817941(-) (pilT) [Pseudomonas putida KT2440]
MDVTDLLARAVDAGASDLHLATGQIPMLRLDGELQRMGLPPLSQGALIEGMASVLDNDQRRQWAQGDEMDLALELPALGR
FRLNLFRQLNGPAVTFRLIPGRIATVSELDLADVFQAVAHCRDGLILVGGPTGSGKSSTLATLLDQLNRERALHIITLED
PVEIIHDSQRSLVNQREMGRHSRGFAQGLRSALRQDPDVIMIGELRDLETIRLALRAAETGHLVLATVHARSATSSIDRL
VEVFAAEEKPLVRAMLAESLRLVVAQVLVRRVGGGRVAAREVLVATPAVRNLVREGRLAQLSSVMQGGAAEGMLTMEGAL
RRLRERGLIKGL
MDVTDLLARAVDAGASDLHLATGQIPMLRLDGELQRMGLPPLSQGALIEGMASVLDNDQRRQWAQGDEMDLALELPALGR
FRLNLFRQLNGPAVTFRLIPGRIATVSELDLADVFQAVAHCRDGLILVGGPTGSGKSSTLATLLDQLNRERALHIITLED
PVEIIHDSQRSLVNQREMGRHSRGFAQGLRSALRQDPDVIMIGELRDLETIRLALRAAETGHLVLATVHARSATSSIDRL
VEVFAAEEKPLVRAMLAESLRLVVAQVLVRRVGGGRVAAREVLVATPAVRNLVREGRLAQLSSVMQGGAAEGMLTMEGAL
RRLRERGLIKGL
Nucleotide
Download Length: 999 bp
>NTDB_id=21199 PP_RS26545 WP_049588310.1 5816943..5817941(-) (pilT) [Pseudomonas putida KT2440]
ATGGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGCCAGATTCCGAT
GCTGCGCCTGGATGGCGAGTTGCAGCGTATGGGCTTGCCGCCGTTGAGCCAGGGTGCCTTGATCGAGGGCATGGCCAGCG
TGCTGGATAACGATCAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGC
TTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGGCTGATCCCGGGGCGCATTGCGACGGTGAG
TGAGCTGGACCTTGCGGATGTGTTTCAAGCTGTTGCGCATTGCCGGGATGGCTTGATCCTCGTGGGCGGGCCGACCGGCA
GTGGCAAGTCCAGCACCCTGGCAACGCTGCTCGACCAGCTGAACCGCGAGCGGGCGCTGCACATCATTACCCTGGAAGAC
CCTGTCGAGATCATCCATGACAGCCAGCGCAGCCTGGTCAACCAGCGTGAGATGGGGCGCCATAGTCGCGGCTTTGCTCA
GGGGCTGCGCAGTGCGCTGCGCCAGGACCCGGACGTGATCATGATCGGCGAGTTGCGCGACCTGGAAACCATTCGCCTGG
CCCTGCGCGCGGCCGAAACCGGGCACCTGGTGCTGGCAACCGTGCATGCGCGTTCGGCGACCAGCAGCATCGACAGGTTG
GTGGAGGTGTTTGCTGCCGAGGAAAAGCCGTTGGTGCGGGCGATGCTGGCCGAGTCGCTGCGCCTGGTGGTCGCGCAGGT
GCTGGTCAGGCGCGTAGGGGGTGGGCGGGTGGCGGCGCGGGAAGTGCTGGTGGCGACGCCGGCGGTGCGTAACCTGGTTC
GGGAGGGGCGGTTGGCGCAGTTGTCTTCAGTGATGCAGGGCGGGGCGGCGGAGGGGATGCTGACGATGGAGGGGGCGTTG
CGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAG
ATGGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGCCAGATTCCGAT
GCTGCGCCTGGATGGCGAGTTGCAGCGTATGGGCTTGCCGCCGTTGAGCCAGGGTGCCTTGATCGAGGGCATGGCCAGCG
TGCTGGATAACGATCAGCGCCGGCAGTGGGCCCAAGGCGATGAAATGGACCTTGCGCTGGAGTTGCCGGCGCTTGGGCGC
TTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGGCGGTTACCTTTCGGCTGATCCCGGGGCGCATTGCGACGGTGAG
TGAGCTGGACCTTGCGGATGTGTTTCAAGCTGTTGCGCATTGCCGGGATGGCTTGATCCTCGTGGGCGGGCCGACCGGCA
GTGGCAAGTCCAGCACCCTGGCAACGCTGCTCGACCAGCTGAACCGCGAGCGGGCGCTGCACATCATTACCCTGGAAGAC
CCTGTCGAGATCATCCATGACAGCCAGCGCAGCCTGGTCAACCAGCGTGAGATGGGGCGCCATAGTCGCGGCTTTGCTCA
GGGGCTGCGCAGTGCGCTGCGCCAGGACCCGGACGTGATCATGATCGGCGAGTTGCGCGACCTGGAAACCATTCGCCTGG
CCCTGCGCGCGGCCGAAACCGGGCACCTGGTGCTGGCAACCGTGCATGCGCGTTCGGCGACCAGCAGCATCGACAGGTTG
GTGGAGGTGTTTGCTGCCGAGGAAAAGCCGTTGGTGCGGGCGATGCTGGCCGAGTCGCTGCGCCTGGTGGTCGCGCAGGT
GCTGGTCAGGCGCGTAGGGGGTGGGCGGGTGGCGGCGCGGGAAGTGCTGGTGGCGACGCCGGCGGTGCGTAACCTGGTTC
GGGAGGGGCGGTTGGCGCAGTTGTCTTCAGTGATGCAGGGCGGGGCGGCGGAGGGGATGCTGACGATGGAGGGGGCGTTG
CGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
50.76 |
99.096 |
0.503 |
| pilT | Acinetobacter nosocomialis M2 |
50.152 |
99.096 |
0.497 |
| pilT | Acinetobacter baumannii D1279779 |
50.152 |
99.096 |
0.497 |
| pilT | Acinetobacter baumannii strain A118 |
50.152 |
99.096 |
0.497 |
| pilT | Acinetobacter baylyi ADP1 |
49.697 |
99.398 |
0.494 |
| pilT | Pseudomonas stutzeri DSM 10701 |
49.848 |
99.096 |
0.494 |
| pilT | Neisseria meningitidis 8013 |
49.091 |
99.398 |
0.488 |
| pilT | Neisseria gonorrhoeae MS11 |
48.788 |
99.398 |
0.485 |
| pilT | Vibrio cholerae strain A1552 |
48.936 |
99.096 |
0.485 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.936 |
99.096 |
0.485 |
| pilT | Legionella pneumophila strain ERS1305867 |
48.632 |
99.096 |
0.482 |
| pilT | Legionella pneumophila strain Lp02 |
48.632 |
99.096 |
0.482 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
46.429 |
100 |
0.47 |
| pilU | Pseudomonas stutzeri DSM 10701 |
37.879 |
99.398 |
0.377 |