Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | DVU_RS05945 | Genome accession | NC_002937 |
| Coordinates | 1350023..1351132 (-) | Length | 369 a.a. |
| NCBI ID | WP_010938558.1 | Uniprot ID | - |
| Organism | Nitratidesulfovibrio vulgaris str. Hildenborough | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1345023..1356132
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DVU_RS05935 (DVU1260) | - | 1346657..1347940 (+) | 1284 | WP_010938556.1 | OmpP1/FadL family transporter | - |
| DVU_RS05940 (DVU1261) | - | 1348254..1349912 (-) | 1659 | WP_014524335.1 | AAA family ATPase | - |
| DVU_RS05945 (DVU1262) | pilT | 1350023..1351132 (-) | 1110 | WP_010938558.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| DVU_RS05950 (DVU1263) | - | 1351308..1352111 (+) | 804 | WP_010938559.1 | A24 family peptidase | - |
| DVU_RS05955 (DVU1264) | - | 1352419..1353180 (-) | 762 | WP_010938560.1 | lytic transglycosylase domain-containing protein | - |
| DVU_RS05960 (DVU1265) | - | 1353191..1353940 (+) | 750 | WP_010938561.1 | DUF4124 domain-containing protein | - |
Sequence
Protein
Download Length: 369 a.a. Molecular weight: 40926.97 Da Isoelectric Point: 6.2702
>NTDB_id=21041 DVU_RS05945 WP_010938558.1 1350023..1351132(-) (pilT) [Nitratidesulfovibrio vulgaris str. Hildenborough]
MPAIDRFFEILHQRHGSDLHLSVGCVPMLRVHGRLERLDHPPLTDDMMRALLHEITPPAKLALFEECGDVDFSHAVPGIA
RYRANLFRQERGVGAAFREIPQHILSVDELGLPPLLQELAMLPKGLVLLTGPTGSGKSTTLAAMIDYANSHRRDHIITIE
DPIEFVHTPRGCLINQREVGRDTRSFAAALRGALREDPDIILVGEMRDLETITLALEAAETGHLVLSTVHTISAAKTIDR
IVEVFPSDTQAQIRTSLSETLQAVISQVLLRRTDKPGRVAALEIMLGVPAVRNLIRESKTFQIPSFLQTSKAQGMQTLDD
DIMRLLSQGVISARDAATHAMDKQRFAAFAQRETATQQRPLSLQDDDDY
MPAIDRFFEILHQRHGSDLHLSVGCVPMLRVHGRLERLDHPPLTDDMMRALLHEITPPAKLALFEECGDVDFSHAVPGIA
RYRANLFRQERGVGAAFREIPQHILSVDELGLPPLLQELAMLPKGLVLLTGPTGSGKSTTLAAMIDYANSHRRDHIITIE
DPIEFVHTPRGCLINQREVGRDTRSFAAALRGALREDPDIILVGEMRDLETITLALEAAETGHLVLSTVHTISAAKTIDR
IVEVFPSDTQAQIRTSLSETLQAVISQVLLRRTDKPGRVAALEIMLGVPAVRNLIRESKTFQIPSFLQTSKAQGMQTLDD
DIMRLLSQGVISARDAATHAMDKQRFAAFAQRETATQQRPLSLQDDDDY
Nucleotide
Download Length: 1110 bp
>NTDB_id=21041 DVU_RS05945 WP_010938558.1 1350023..1351132(-) (pilT) [Nitratidesulfovibrio vulgaris str. Hildenborough]
ATGCCCGCCATCGACAGGTTCTTCGAAATACTGCATCAGCGTCACGGGTCCGACCTGCACCTCTCGGTGGGGTGCGTTCC
CATGTTGCGGGTACATGGCAGGCTTGAAAGGCTCGACCACCCGCCCCTCACAGACGACATGATGCGCGCCCTGCTGCACG
AAATCACACCGCCCGCGAAACTGGCACTCTTCGAAGAATGCGGCGATGTGGACTTCAGCCATGCCGTCCCCGGCATCGCC
CGCTACCGCGCCAACCTCTTCCGGCAGGAACGCGGCGTTGGCGCGGCCTTTCGCGAAATTCCGCAGCACATCCTCTCAGT
CGATGAACTTGGGCTGCCACCGCTGCTTCAGGAACTCGCCATGCTCCCCAAGGGGCTTGTCCTGCTCACGGGGCCGACCG
GCAGCGGCAAGTCGACGACGCTTGCGGCGATGATCGACTACGCCAACAGCCACCGCCGCGACCATATCATCACTATCGAA
GACCCTATCGAATTCGTGCACACGCCACGCGGCTGCCTCATCAACCAGCGAGAAGTGGGGCGCGACACGCGCAGCTTCGC
TGCCGCCCTCCGCGGTGCGTTACGCGAAGACCCCGACATCATCCTCGTTGGCGAAATGCGCGACCTCGAAACCATCACGC
TCGCGCTTGAAGCCGCAGAGACCGGGCATCTCGTGCTCTCGACCGTGCACACCATCTCGGCCGCGAAGACCATCGACCGC
ATCGTGGAGGTCTTTCCCTCCGACACGCAGGCGCAGATACGGACAAGCCTCTCCGAGACGCTTCAGGCGGTCATCTCACA
GGTGCTCTTGCGACGCACCGACAAACCGGGACGTGTGGCGGCACTGGAAATCATGCTGGGTGTTCCCGCCGTGCGCAACC
TTATCCGCGAGAGCAAGACCTTCCAGATTCCGAGTTTCCTCCAGACGAGCAAGGCACAAGGGATGCAGACCCTCGACGAC
GACATCATGCGCCTTCTGTCACAGGGGGTCATCAGCGCGCGCGATGCCGCGACCCATGCCATGGACAAGCAGCGGTTCGC
CGCTTTTGCTCAGCGTGAGACGGCAACCCAGCAACGTCCATTGAGCCTACAGGATGACGACGACTACTGA
ATGCCCGCCATCGACAGGTTCTTCGAAATACTGCATCAGCGTCACGGGTCCGACCTGCACCTCTCGGTGGGGTGCGTTCC
CATGTTGCGGGTACATGGCAGGCTTGAAAGGCTCGACCACCCGCCCCTCACAGACGACATGATGCGCGCCCTGCTGCACG
AAATCACACCGCCCGCGAAACTGGCACTCTTCGAAGAATGCGGCGATGTGGACTTCAGCCATGCCGTCCCCGGCATCGCC
CGCTACCGCGCCAACCTCTTCCGGCAGGAACGCGGCGTTGGCGCGGCCTTTCGCGAAATTCCGCAGCACATCCTCTCAGT
CGATGAACTTGGGCTGCCACCGCTGCTTCAGGAACTCGCCATGCTCCCCAAGGGGCTTGTCCTGCTCACGGGGCCGACCG
GCAGCGGCAAGTCGACGACGCTTGCGGCGATGATCGACTACGCCAACAGCCACCGCCGCGACCATATCATCACTATCGAA
GACCCTATCGAATTCGTGCACACGCCACGCGGCTGCCTCATCAACCAGCGAGAAGTGGGGCGCGACACGCGCAGCTTCGC
TGCCGCCCTCCGCGGTGCGTTACGCGAAGACCCCGACATCATCCTCGTTGGCGAAATGCGCGACCTCGAAACCATCACGC
TCGCGCTTGAAGCCGCAGAGACCGGGCATCTCGTGCTCTCGACCGTGCACACCATCTCGGCCGCGAAGACCATCGACCGC
ATCGTGGAGGTCTTTCCCTCCGACACGCAGGCGCAGATACGGACAAGCCTCTCCGAGACGCTTCAGGCGGTCATCTCACA
GGTGCTCTTGCGACGCACCGACAAACCGGGACGTGTGGCGGCACTGGAAATCATGCTGGGTGTTCCCGCCGTGCGCAACC
TTATCCGCGAGAGCAAGACCTTCCAGATTCCGAGTTTCCTCCAGACGAGCAAGGCACAAGGGATGCAGACCCTCGACGAC
GACATCATGCGCCTTCTGTCACAGGGGGTCATCAGCGCGCGCGATGCCGCGACCCATGCCATGGACAAGCAGCGGTTCGC
CGCTTTTGCTCAGCGTGAGACGGCAACCCAGCAACGTCCATTGAGCCTACAGGATGACGACGACTACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter baylyi ADP1 |
56.886 |
90.515 |
0.515 |
| pilT | Pseudomonas aeruginosa PAK |
56.287 |
90.515 |
0.509 |
| pilT | Acinetobacter nosocomialis M2 |
56.667 |
89.431 |
0.507 |
| pilT | Pseudomonas stutzeri DSM 10701 |
55.988 |
90.515 |
0.507 |
| pilT | Acinetobacter baumannii strain A118 |
56.364 |
89.431 |
0.504 |
| pilT | Acinetobacter baumannii D1279779 |
56.364 |
89.431 |
0.504 |
| pilT | Legionella pneumophila strain ERS1305867 |
54.79 |
90.515 |
0.496 |
| pilT | Legionella pneumophila strain Lp02 |
54.79 |
90.515 |
0.496 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
53.916 |
89.973 |
0.485 |
| pilT | Vibrio cholerae strain A1552 |
53.916 |
89.973 |
0.485 |
| pilT | Neisseria meningitidis 8013 |
52.537 |
90.786 |
0.477 |
| pilT | Neisseria gonorrhoeae MS11 |
52.239 |
90.786 |
0.474 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.538 |
92.683 |
0.45 |
| pilU | Acinetobacter baylyi ADP1 |
40.299 |
90.786 |
0.366 |