Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CO706_RS11250 Genome accession   NZ_CP023535
Coordinates   1867450..1867965 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain FDAARGOS_403     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1862450..1872965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO706_RS11225 (CO706_11225) ygaZ 1862849..1863586 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CO706_RS11230 (CO706_11230) ygaH 1863576..1863911 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CO706_RS11235 (CO706_11235) emrR 1864002..1864532 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CO706_RS11240 (CO706_11240) emrA 1864659..1865831 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CO706_RS11245 (CO706_11245) emrB 1865848..1867386 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CO706_RS11250 (CO706_11250) luxS 1867450..1867965 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  CO706_RS11255 (CO706_11255) gshA 1868115..1869671 (-) 1557 WP_000611800.1 glutamate--cysteine ligase -
  CO706_RS11260 (CO706_11260) yqaA 1869744..1870172 (-) 429 WP_001287457.1 YqaA family protein -
  CO706_RS11265 (CO706_11265) yqaB 1870169..1870735 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CO706_RS11295 (CO706_11295) csrA 1872328..1872513 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=207993 CO706_RS11250 WP_001130210.1 1867450..1867965(-) (luxS) [Escherichia coli strain FDAARGOS_403]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=207993 CO706_RS11250 WP_001130210.1 1867450..1867965(-) (luxS) [Escherichia coli strain FDAARGOS_403]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment