Detailed information NTG0207990

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BSZ04_RS10990
• Genome accession: NZ_CP018312
• Coordinates: 395555..396424 (-)
• Length: 289 a.a.
• NCBI ID: WP_010450189.1
• Uniprot ID: -
• Organism: Vibrio rotiferianus strain B64D1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 390555..401424

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSZ04_RS10955 (BSZ04_10850)	rpsP	391346..391594 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
BSZ04_RS10960 (BSZ04_10855)	rimM	391624..392172 (+)	549	WP_005438038.1	ribosome maturation factor RimM	-
BSZ04_RS10965 (BSZ04_10860)	trmD	392200..392943 (+)	744	WP_010450200.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BSZ04_RS10970 (BSZ04_10865)	rplS	392985..393338 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
BSZ04_RS10975 (BSZ04_10870)	yacG	393914..394108 (-)	195	WP_088880388.1	DNA gyrase inhibitor YacG	-
BSZ04_RS10980 (BSZ04_10875)	zapD	394171..394911 (-)	741	WP_045393845.1	cell division protein ZapD	-
BSZ04_RS10985 (BSZ04_10880)	coaE	394940..395554 (-)	615	WP_088880389.1	dephospho-CoA kinase	-
BSZ04_RS10990 (BSZ04_10885)	pilD	395555..396424 (-)	870	WP_010450189.1	prepilin peptidase	Machinery gene
BSZ04_RS10995 (BSZ04_10890)	pilC	396495..397718 (-)	1224	WP_088880390.1	type II secretion system F family protein	Machinery gene
BSZ04_RS11000 (BSZ04_10895)	pilB	397732..399417 (-)	1686	WP_088880391.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BSZ04_RS11005 (BSZ04_10900)	pilA	399421..399870 (-)	450	WP_088880392.1	pilin	Machinery gene
BSZ04_RS11010 (BSZ04_10905)	nadC	400098..400985 (-)	888	WP_088880393.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32482.60 Da
• Isoelectric Point: 7.5424

>NTDB_id=207990 BSZ04_RS10990 WP_010450189.1 395555..396424(-) (pilD) [Vibrio rotiferianus strain B64D1]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLRGKCHNCQSSISARYPLVELLTAFCSGFIAFHFGFSYFTAALIFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALVGISPVSLQDAVIGAMAGYLCLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=207990 BSZ04_RS10990 WP_010450189.1 395555..396424(-) (pilD) [Vibrio rotiferianus strain B64D1]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTGCCACGATTTTTGGTTTGATCGTAGGCAGCTTCCTCAA
CGTTGTTATTTATCGACTACCCAAAATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAGTCATTTCCTGAATACAAGA
TCGAGCCACCAAAAGAGACGTTAACGCTAAGTGTGCCGCGTTCATCTTGTCAGCAATGTGGTACACACATTCGCATCAGA
GACAACATCCCTGTGATCAGTTGGCTATTACTCAGAGGTAAATGCCACAACTGCCAGTCTTCTATTAGTGCTCGCTACCC
TCTTGTCGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCCTTTCATTTCGGTTTTAGCTACTTCACTGCGGCCCTTA
TTTTCTTTACCTTTGTACTGATAGCCGCCACATTCATCGACCTAGATACGATGTTGTTGCCGGATCAACTCACGCTGCCA
TTAATGTGGGCAGGTATTGCACTTGCTCTCGTGGGTATAAGCCCTGTTAGCCTGCAAGACGCCGTTATTGGAGCTATGGC
GGGTTACCTCTGCCTCTGGAGTGTTTACTGGGCATTCAAACTGCTAACTGGCAAAGAAGGTATGGGCTACGGTGATTTTA
AACTACTTGCAGCATTAGGAGCTTGGTTAGGTTGGCAATCTTTGCCAATGATCATTTTGCTTTCATCAGTGGTAGGCGTC
ATCTTTGGTCTTATTCAATTGCGTTTGCAGAAGCAAGGCATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATCGC
GGGTTGGGTAAGCCTAATTTGGGGCAATCAAATCCTTAACTGGTACTTTACGTCAATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	95.502	100	0.955
pilD	Vibrio cholerae strain A1552	74.653	99.654	0.744
pilD	Acinetobacter baumannii D1279779	51.825	94.81	0.491
pilD	Acinetobacter nosocomialis M2	51.46	94.81	0.488
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443