Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BSZ04_RS10995 Genome accession   NZ_CP018312
Coordinates   396495..397718 (-) Length   407 a.a.
NCBI ID   WP_088880390.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain B64D1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 391495..402718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ04_RS10960 (BSZ04_10855) rimM 391624..392172 (+) 549 WP_005438038.1 ribosome maturation factor RimM -
  BSZ04_RS10965 (BSZ04_10860) trmD 392200..392943 (+) 744 WP_010450200.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BSZ04_RS10970 (BSZ04_10865) rplS 392985..393338 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  BSZ04_RS10975 (BSZ04_10870) yacG 393914..394108 (-) 195 WP_088880388.1 DNA gyrase inhibitor YacG -
  BSZ04_RS10980 (BSZ04_10875) zapD 394171..394911 (-) 741 WP_045393845.1 cell division protein ZapD -
  BSZ04_RS10985 (BSZ04_10880) coaE 394940..395554 (-) 615 WP_088880389.1 dephospho-CoA kinase -
  BSZ04_RS10990 (BSZ04_10885) pilD 395555..396424 (-) 870 WP_010450189.1 prepilin peptidase Machinery gene
  BSZ04_RS10995 (BSZ04_10890) pilC 396495..397718 (-) 1224 WP_088880390.1 type II secretion system F family protein Machinery gene
  BSZ04_RS11000 (BSZ04_10895) pilB 397732..399417 (-) 1686 WP_088880391.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BSZ04_RS11005 (BSZ04_10900) pilA 399421..399870 (-) 450 WP_088880392.1 pilin Machinery gene
  BSZ04_RS11010 (BSZ04_10905) nadC 400098..400985 (-) 888 WP_088880393.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BSZ04_RS11015 (BSZ04_10910) ampD 401078..401629 (+) 552 WP_038885735.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45137.49 Da        Isoelectric Point: 10.4872

>NTDB_id=207991 BSZ04_RS10995 WP_088880390.1 396495..397718(-) (pilC) [Vibrio rotiferianus strain B64D1]
MKTKQPNLRNFRWKGINSSGKQTSGQLLALTEQEVRERLIAQHIKIRKLKKSNISLVTKLSHKVKAKDITIFTRQIATML
ATGVPIVPALKLVSENHRKAEMKSVLISISKAVEAGTPISKAMRLASHHFDPLYTDLISTGEQSGNLSQVFERLATYREK
SEQLKAKVIKALIYPVMVIFVALAVSYLMLTQVIPEFEKMFVGFGADLPWFTKQVLNLSSWMQIWGPFILSGCIAVVLSS
RFLAKRSDSFRLVLAKNVLKLPVLGGVLSKAAIAKFSRTLATSFSSGIPILTSLKTTSKTSGNLHYQLAIEEVYRNTAAG
MPVYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=207991 BSZ04_RS10995 WP_088880390.1 396495..397718(-) (pilC) [Vibrio rotiferianus strain B64D1]
ATGAAAACCAAACAACCGAATCTTAGAAACTTTCGTTGGAAAGGCATCAACAGCTCTGGAAAGCAAACATCAGGTCAACT
TCTTGCTTTAACAGAACAAGAAGTTAGAGAGCGCTTGATAGCACAACATATTAAAATCAGAAAGCTAAAGAAATCTAATA
TTTCCTTGGTTACCAAGCTTAGTCATAAAGTCAAAGCAAAGGACATCACTATTTTCACTCGGCAAATCGCAACAATGCTC
GCCACTGGTGTTCCTATTGTTCCGGCATTAAAACTGGTTTCGGAAAACCACCGTAAAGCAGAGATGAAATCCGTTCTTAT
CAGTATTAGCAAAGCCGTTGAAGCAGGAACGCCAATATCCAAAGCCATGCGCCTTGCCAGCCATCACTTTGATCCGCTTT
ATACTGACCTAATATCCACAGGAGAACAATCTGGTAACTTATCGCAGGTTTTTGAACGCCTAGCCACTTACCGAGAAAAA
AGCGAACAACTAAAAGCGAAAGTGATTAAAGCACTTATCTACCCTGTAATGGTTATCTTCGTTGCTCTAGCAGTTTCATA
CCTGATGCTGACCCAGGTTATTCCTGAATTTGAAAAAATGTTTGTTGGGTTCGGAGCCGATCTCCCTTGGTTCACCAAAC
AAGTCCTTAACTTATCCTCATGGATGCAAATTTGGGGGCCTTTTATACTATCAGGCTGCATAGCCGTCGTTCTATCCAGT
CGTTTTTTAGCTAAACGTTCTGATTCGTTTCGGTTAGTCCTCGCAAAAAATGTTCTCAAACTACCAGTCTTAGGTGGGGT
CTTATCTAAAGCCGCTATAGCAAAGTTTAGCCGAACCCTCGCCACCAGTTTTAGTTCAGGAATACCAATACTCACGAGCT
TAAAAACCACTTCGAAAACATCGGGGAACTTACACTACCAACTCGCGATAGAAGAGGTTTATCGCAATACTGCTGCAGGG
ATGCCTGTTTATATCGCGATGCGAAATTGCAATGTGTTTCCTGAATTAGTTTTGCAAATGGTTATGATTGGAGAAGAATC
CGGTCGCTTGGACGATATGCTCAATAAAGTCGCTACTATTTACGAGTTTGAGGTCGACAATACAGTCGATAACTTAAGTA
AGATCCTAGAGCCCTTAATTATTGTTTTTCTTGGTGTTGTCGTTGGAGGTTTAGTCACAGCAATGTACTTACCAATCTTT
AACTTGATGAGCGTATTGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

81.081

100

0.811
  pilC Vibrio cholerae strain A1552

72

98.28

0.708
  pilC Acinetobacter baylyi ADP1

43.5

98.28

0.428
  pilC Acinetobacter baumannii D1279779

43

98.28

0.423
  pilC Legionella pneumophila strain ERS1305867

40.786

100

0.408
  pilC Pseudomonas stutzeri DSM 10701

39.604

99.263

0.393
  pilG Neisseria meningitidis 44/76-A

37.811

98.771

0.373
  pilG Neisseria gonorrhoeae MS11

37.594

98.034

0.369

Multiple sequence alignment