Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   BLL42_RS17955 Genome accession   NZ_CP017886
Coordinates   3736462..3736878 (+) Length   138 a.a.
NCBI ID   WP_071553276.1    Uniprot ID   A0A1J0ENG3
Organism   Pseudomonas frederiksbergensis strain ERDD5:01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3731462..3741878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLL42_RS17930 (BLL42_17565) yacG 3731623..3731823 (-) 201 WP_071553271.1 DNA gyrase inhibitor YacG -
  BLL42_RS17935 (BLL42_17570) coaE 3731820..3732443 (-) 624 WP_071553272.1 dephospho-CoA kinase -
  BLL42_RS17940 (BLL42_17575) pilD 3732440..3733312 (-) 873 WP_071553273.1 A24 family peptidase Machinery gene
  BLL42_RS17945 (BLL42_17580) pilC 3733315..3734532 (-) 1218 WP_071553274.1 type II secretion system F family protein Machinery gene
  BLL42_RS17950 (BLL42_17585) pilB 3734536..3736236 (-) 1701 WP_071553275.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BLL42_RS17955 (BLL42_17590) comP 3736462..3736878 (+) 417 WP_071553276.1 pilin Machinery gene
  BLL42_RS17960 (BLL42_17595) - 3737190..3737546 (+) 357 WP_071553277.1 BON domain-containing protein -
  BLL42_RS17965 (BLL42_17600) - 3737681..3737980 (-) 300 WP_071553278.1 DUF2845 domain-containing protein -
  BLL42_RS17970 (BLL42_17605) - 3737983..3740925 (-) 2943 WP_071553279.1 DUF748 domain-containing protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14053.29 Da        Isoelectric Point: 8.1045

>NTDB_id=203586 BLL42_RS17955 WP_071553276.1 3736462..3736878(+) (comP) [Pseudomonas frederiksbergensis strain ERDD5:01]
MNNQKGFTLIELLIVVAIIGILATFALPAYSKYQARAKVTAGVEEVSALKVAYEDIMNTGTTNPVIGTVSPAGATTSNCT
LGVTGTVASGAGTITCTLINAPSIIQGKVITLTRIQTGSWSCATTALKDYAPTGCPGV

Nucleotide


Download         Length: 417 bp        

>NTDB_id=203586 BLL42_RS17955 WP_071553276.1 3736462..3736878(+) (comP) [Pseudomonas frederiksbergensis strain ERDD5:01]
ATGAATAATCAAAAAGGTTTTACCCTGATCGAGCTGTTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGGCTTATAGCAAATACCAGGCACGGGCCAAGGTCACCGCCGGGGTCGAGGAAGTATCGGCGCTCAAAGTGGCTTACG
AAGATATTATGAATACAGGTACTACGAACCCGGTGATCGGCACTGTTTCGCCTGCGGGGGCTACAACCTCGAACTGCACG
CTGGGCGTAACGGGTACTGTCGCCAGTGGAGCCGGGACCATTACCTGCACCCTGATTAATGCCCCTTCGATTATACAGGG
TAAGGTCATTACGCTGACTCGCATTCAGACTGGCTCTTGGTCTTGTGCGACCACGGCCTTGAAAGACTACGCGCCCACTG
GCTGCCCTGGCGTTTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0ENG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

44.444

100

0.493
  pilA Acinetobacter baumannii strain A118

45.255

99.275

0.449
  pilA Pseudomonas aeruginosa PAK

38.667

100

0.42
  pilA2 Legionella pneumophila strain ERS1305867

39.31

100

0.413
  pilA2 Legionella pneumophila str. Paris

39.31

100

0.413
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.716

100

0.406
  pilA/pilAII Pseudomonas stutzeri DSM 10701

39.706

98.551

0.391
  pilA Vibrio cholerae C6706

38.028

100

0.391
  pilA Vibrio cholerae strain A1552

38.028

100

0.391
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.028

100

0.391
  pilA Vibrio parahaemolyticus RIMD 2210633

40.157

92.029

0.37

Multiple sequence alignment