Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | BLL42_RS17940 | Genome accession | NZ_CP017886 |
| Coordinates | 3732440..3733312 (-) | Length | 290 a.a. |
| NCBI ID | WP_071553273.1 | Uniprot ID | A0A1J0ENN8 |
| Organism | Pseudomonas frederiksbergensis strain ERDD5:01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3727440..3738312
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BLL42_RS17900 (BLL42_17540) | - | 3728131..3729429 (-) | 1299 | WP_071553266.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| BLL42_RS17905 (BLL42_17545) | - | 3729490..3729663 (-) | 174 | WP_071553267.1 | DUF3094 family protein | - |
| BLL42_RS30510 | - | 3729675..3729854 (-) | 180 | Protein_3526 | hypothetical protein | - |
| BLL42_RS17915 (BLL42_17550) | - | 3729890..3730516 (-) | 627 | WP_071553268.1 | DUF1780 domain-containing protein | - |
| BLL42_RS17920 (BLL42_17555) | - | 3730648..3731334 (+) | 687 | WP_071553269.1 | energy-coupling factor ABC transporter permease | - |
| BLL42_RS17925 (BLL42_17560) | - | 3731398..3731613 (+) | 216 | WP_071553270.1 | hypothetical protein | - |
| BLL42_RS17930 (BLL42_17565) | yacG | 3731623..3731823 (-) | 201 | WP_071553271.1 | DNA gyrase inhibitor YacG | - |
| BLL42_RS17935 (BLL42_17570) | coaE | 3731820..3732443 (-) | 624 | WP_071553272.1 | dephospho-CoA kinase | - |
| BLL42_RS17940 (BLL42_17575) | pilD | 3732440..3733312 (-) | 873 | WP_071553273.1 | A24 family peptidase | Machinery gene |
| BLL42_RS17945 (BLL42_17580) | pilC | 3733315..3734532 (-) | 1218 | WP_071553274.1 | type II secretion system F family protein | Machinery gene |
| BLL42_RS17950 (BLL42_17585) | pilB | 3734536..3736236 (-) | 1701 | WP_071553275.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BLL42_RS17955 (BLL42_17590) | comP | 3736462..3736878 (+) | 417 | WP_071553276.1 | pilin | Machinery gene |
| BLL42_RS17960 (BLL42_17595) | - | 3737190..3737546 (+) | 357 | WP_071553277.1 | BON domain-containing protein | - |
| BLL42_RS17965 (BLL42_17600) | - | 3737681..3737980 (-) | 300 | WP_071553278.1 | DUF2845 domain-containing protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31904.22 Da Isoelectric Point: 8.1582
>NTDB_id=203583 BLL42_RS17940 WP_071553273.1 3732440..3733312(-) (pilD) [Pseudomonas frederiksbergensis strain ERDD5:01]
MPLSEFMAAYPLAFVVAALVLGLVIGSFLNVVVWRLPKMLECDWRQQALDVLGLPPEAAVPTYNLMLPHSHCPQCAHRIR
AWENIPLLSYLALRGRCSNCKAPISVRYPLTELACGVLSAFVAWHFGFGWTAAWVLVLSWGLLAMCLIDADHQLLPDVLV
LPLLWLGLIVNSFGLFVPLQAAMWGAVTGYLLLYSVYWLFKLMTGKEGIGHGDFKLLALLGAWGGWQILPLTVLLSSLVG
AVAGVILLRLKEAKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGFK
MPLSEFMAAYPLAFVVAALVLGLVIGSFLNVVVWRLPKMLECDWRQQALDVLGLPPEAAVPTYNLMLPHSHCPQCAHRIR
AWENIPLLSYLALRGRCSNCKAPISVRYPLTELACGVLSAFVAWHFGFGWTAAWVLVLSWGLLAMCLIDADHQLLPDVLV
LPLLWLGLIVNSFGLFVPLQAAMWGAVTGYLLLYSVYWLFKLMTGKEGIGHGDFKLLALLGAWGGWQILPLTVLLSSLVG
AVAGVILLRLKEAKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=203583 BLL42_RS17940 WP_071553273.1 3732440..3733312(-) (pilD) [Pseudomonas frederiksbergensis strain ERDD5:01]
ATGCCCTTGAGTGAATTTATGGCCGCTTATCCACTGGCGTTTGTTGTCGCCGCGCTAGTGCTCGGGCTGGTGATCGGTAG
CTTTCTCAACGTGGTGGTCTGGCGCCTGCCAAAAATGCTTGAGTGCGACTGGCGGCAACAAGCCCTGGATGTACTGGGTT
TACCGCCCGAAGCAGCGGTCCCGACCTACAACCTGATGCTGCCGCATTCACACTGCCCGCAGTGCGCCCATCGAATCCGC
GCCTGGGAAAACATTCCACTGCTCAGTTACCTGGCACTGCGCGGCCGATGCTCAAATTGCAAAGCGCCGATCAGCGTCCG
CTACCCCTTGACCGAACTGGCCTGCGGCGTACTGTCGGCGTTTGTCGCCTGGCACTTCGGCTTCGGTTGGACAGCAGCGT
GGGTGCTGGTCTTGAGTTGGGGGCTGCTGGCAATGTGCCTGATCGACGCCGACCACCAACTGCTGCCTGATGTGCTGGTG
TTGCCGTTGTTATGGCTGGGCCTGATCGTCAACAGCTTCGGGCTTTTCGTGCCTTTGCAGGCGGCGATGTGGGGTGCGGT
GACTGGCTATCTGCTGCTGTACTCGGTGTATTGGCTGTTCAAACTGATGACCGGCAAGGAAGGCATCGGTCACGGCGACT
TCAAGCTCCTGGCGCTGCTCGGTGCCTGGGGCGGTTGGCAGATTCTGCCGCTGACGGTCCTGCTTTCATCGCTGGTGGGC
GCCGTGGCGGGGGTGATTTTACTGCGTCTGAAAGAGGCCAAAACCTCGACGCCGATCCCTTTCGGACCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTCAAATGA
ATGCCCTTGAGTGAATTTATGGCCGCTTATCCACTGGCGTTTGTTGTCGCCGCGCTAGTGCTCGGGCTGGTGATCGGTAG
CTTTCTCAACGTGGTGGTCTGGCGCCTGCCAAAAATGCTTGAGTGCGACTGGCGGCAACAAGCCCTGGATGTACTGGGTT
TACCGCCCGAAGCAGCGGTCCCGACCTACAACCTGATGCTGCCGCATTCACACTGCCCGCAGTGCGCCCATCGAATCCGC
GCCTGGGAAAACATTCCACTGCTCAGTTACCTGGCACTGCGCGGCCGATGCTCAAATTGCAAAGCGCCGATCAGCGTCCG
CTACCCCTTGACCGAACTGGCCTGCGGCGTACTGTCGGCGTTTGTCGCCTGGCACTTCGGCTTCGGTTGGACAGCAGCGT
GGGTGCTGGTCTTGAGTTGGGGGCTGCTGGCAATGTGCCTGATCGACGCCGACCACCAACTGCTGCCTGATGTGCTGGTG
TTGCCGTTGTTATGGCTGGGCCTGATCGTCAACAGCTTCGGGCTTTTCGTGCCTTTGCAGGCGGCGATGTGGGGTGCGGT
GACTGGCTATCTGCTGCTGTACTCGGTGTATTGGCTGTTCAAACTGATGACCGGCAAGGAAGGCATCGGTCACGGCGACT
TCAAGCTCCTGGCGCTGCTCGGTGCCTGGGGCGGTTGGCAGATTCTGCCGCTGACGGTCCTGCTTTCATCGCTGGTGGGC
GCCGTGGCGGGGGTGATTTTACTGCGTCTGAAAGAGGCCAAAACCTCGACGCCGATCCCTTTCGGACCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.333 |
98.276 |
0.524 |
| pilD | Vibrio campbellii strain DS40M4 |
50.526 |
98.276 |
0.497 |
| pilD | Acinetobacter baumannii D1279779 |
49.817 |
94.138 |
0.469 |
| pilD | Acinetobacter nosocomialis M2 |
49.817 |
94.138 |
0.469 |
| pilD | Neisseria gonorrhoeae MS11 |
48.889 |
93.103 |
0.455 |