Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   SSU05_0128 Genome accession   CP000407
Coordinates   121628..121909 (+) Length   93 a.a.
NCBI ID   ABP89098.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 116628..126909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0123 - 118274..118663 (+) 390 ABP89093.1 Uncharacterized protein conserved in bacteria -
  SSU05_0124 - 118698..118934 (-) 237 ABP89094.1 Uncharacterized protein -
  SSU05_0125 - 119024..119653 (-) 630 ABP89095.1 Uncharacterized protein -
  SSU05_0126 comYA 119727..120677 (+) 951 ABP89096.1 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Machinery gene
  SSU05_0127 comYB 120589..121626 (+) 1038 ABP89097.1 Type II secretory pathway, component PulF Machinery gene
  SSU05_0128 comYC 121628..121909 (+) 282 ABP89098.1 Competence protein ComGC Machinery gene
  SSU05_0129 - 121890..122297 (+) 408 ABP89099.1 Type II secretory pathway, pseudopilin PulG -
  SSU05_0130 comYE 122269..122562 (+) 294 ABP89100.1 Type II secretory pathway, pseudopilin PulG Machinery gene
  SSU05_0131 comGF/cglF 122549..122971 (+) 423 ABP89101.1 Competence protein ComGF Machinery gene
  SSU05_0132 - 122962..123372 (+) 411 ABP89102.1 hypothetical protein -
  SSU05_0133 comYH 123430..124404 (+) 975 ABP89104.1 Adenine-specific DNA methylase Machinery gene
  SSU05_0134 - 124202..124384 (+) 183 ABP89103.1 Adenine-specific DNA methylase -
  SSU05_0135 - 124434..125621 (+) 1188 ABP89105.1 acetate kinase -
  SSU05_0136 - 125744..126487 (+) 744 ABP89106.1 unknown protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10408.34 Da        Isoelectric Point: 7.0117

>NTDB_id=20070 SSU05_0128 ABP89098.1 121628..121909(+) (comYC) [Streptococcus suis 05ZYH33]
MKKLVEMKVKGFTLVEMLVVLGIISLLLLLFVPNLSQQKDAIQKKGDAAVVKVVESQMELYELEHDEEATVADLQAKGYI
TEKQAKQYATAKK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=20070 SSU05_0128 ABP89098.1 121628..121909(+) (comYC) [Streptococcus suis 05ZYH33]
ATGAAAAAATTAGTTGAAATGAAGGTAAAAGGGTTCACTCTGGTGGAAATGTTGGTCGTTTTAGGGATCATTAGCCTGCT
CTTGCTCCTCTTTGTGCCAAATTTGAGCCAGCAGAAGGATGCTATTCAGAAGAAGGGGGATGCGGCTGTTGTCAAAGTAG
TGGAGAGTCAGATGGAGCTCTATGAATTGGAACATGACGAGGAAGCAACGGTGGCAGATTTGCAGGCGAAAGGTTATATT
ACTGAAAAACAAGCAAAACAGTATGCTACGGCGAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus suis isolate S10

100

100

1
  comGC/cglC Streptococcus mitis SK321

68.235

91.398

0.624
  comGC/cglC Streptococcus mitis NCTC 12261

68.235

91.398

0.624
  comGC/cglC Streptococcus pneumoniae D39

70.37

87.097

0.613
  comGC/cglC Streptococcus pneumoniae R6

70.37

87.097

0.613
  comGC/cglC Streptococcus pneumoniae TIGR4

70.37

87.097

0.613
  comGC/cglC Streptococcus pneumoniae Rx1

70.37

87.097

0.613
  comYC Streptococcus gordonii str. Challis substr. CH1

61.798

95.699

0.591
  comYC Streptococcus mutans UA140

60.227

94.624

0.57
  comYC Streptococcus mutans UA159

60.227

94.624

0.57
  comGC Lactococcus lactis subsp. cremoris KW2

56.818

94.624

0.538
  comGC Staphylococcus aureus N315

50

83.871

0.419
  comGC Staphylococcus aureus MW2

50

83.871

0.419
  comGC Bacillus subtilis subsp. subtilis str. 168

49.333

80.645

0.398
  comGC Latilactobacillus sakei subsp. sakei 23K

43.75

86.022

0.376

Multiple sequence alignment