Detailed information
Bioinformatically predicted
Overview
| Name | comYE | Type | Machinery gene |
| Locus tag | SSU05_0130 | Genome accession | CP000407 |
| Coordinates | 122269..122562 (+) | Length | 97 a.a. |
| NCBI ID | ABP89100.1 | Uniprot ID | - |
| Organism | Streptococcus suis 05ZYH33 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 117269..127562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSU05_0123 | - | 118274..118663 (+) | 390 | ABP89093.1 | Uncharacterized protein conserved in bacteria | - |
| SSU05_0124 | - | 118698..118934 (-) | 237 | ABP89094.1 | Uncharacterized protein | - |
| SSU05_0125 | - | 119024..119653 (-) | 630 | ABP89095.1 | Uncharacterized protein | - |
| SSU05_0126 | comYA | 119727..120677 (+) | 951 | ABP89096.1 | Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB | Machinery gene |
| SSU05_0127 | comYB | 120589..121626 (+) | 1038 | ABP89097.1 | Type II secretory pathway, component PulF | Machinery gene |
| SSU05_0128 | comYC | 121628..121909 (+) | 282 | ABP89098.1 | Competence protein ComGC | Machinery gene |
| SSU05_0129 | - | 121890..122297 (+) | 408 | ABP89099.1 | Type II secretory pathway, pseudopilin PulG | - |
| SSU05_0130 | comYE | 122269..122562 (+) | 294 | ABP89100.1 | Type II secretory pathway, pseudopilin PulG | Machinery gene |
| SSU05_0131 | comGF/cglF | 122549..122971 (+) | 423 | ABP89101.1 | Competence protein ComGF | Machinery gene |
| SSU05_0132 | - | 122962..123372 (+) | 411 | ABP89102.1 | hypothetical protein | - |
| SSU05_0133 | comYH | 123430..124404 (+) | 975 | ABP89104.1 | Adenine-specific DNA methylase | Machinery gene |
| SSU05_0134 | - | 124202..124384 (+) | 183 | ABP89103.1 | Adenine-specific DNA methylase | - |
| SSU05_0135 | - | 124434..125621 (+) | 1188 | ABP89105.1 | acetate kinase | - |
| SSU05_0136 | - | 125744..126487 (+) | 744 | ABP89106.1 | unknown protein | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 10817.70 Da Isoelectric Point: 9.8348
>NTDB_id=20071 SSU05_0130 ABP89100.1 122269..122562(+) (comYE) [Streptococcus suis 05ZYH33]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQVWELEQQEVFNLAQMAVQTKQDDLALNGVAVQVQRTAE
RVAVFHEGKEVLSVVKK
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQVWELEQQEVFNLAQMAVQTKQDDLALNGVAVQVQRTAE
RVAVFHEGKEVLSVVKK
Nucleotide
Download Length: 294 bp
>NTDB_id=20071 SSU05_0130 ABP89100.1 122269..122562(+) (comYE) [Streptococcus suis 05ZYH33]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACCAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGTTTGGGAATTGGAACAACAGGAGGTTTTCAACT
TAGCACAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACTGCGGAA
AGAGTTGCGGTTTTCCATGAAGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACCAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGTTTGGGAATTGGAACAACAGGAGGTTTTCAACT
TAGCACAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACTGCGGAA
AGAGTTGCGGTTTTCCATGAAGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYE | Streptococcus mutans UA140 |
51.546 |
100 |
0.515 |
| comYE | Streptococcus mutans UA159 |
51.546 |
100 |
0.515 |
| comGE/cglE | Streptococcus pneumoniae Rx1 |
38.043 |
94.845 |
0.361 |
| comGE/cglE | Streptococcus pneumoniae D39 |
38.043 |
94.845 |
0.361 |
| comGE/cglE | Streptococcus pneumoniae R6 |
38.043 |
94.845 |
0.361 |
| comGE/cglE | Streptococcus pneumoniae TIGR4 |
38.043 |
94.845 |
0.361 |