Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF/cglF   Type   Machinery gene
Locus tag   SSU05_0131 Genome accession   CP000407
Coordinates   122549..122971 (+) Length   140 a.a.
NCBI ID   ABP89101.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 117549..127971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0123 - 118274..118663 (+) 390 ABP89093.1 Uncharacterized protein conserved in bacteria -
  SSU05_0124 - 118698..118934 (-) 237 ABP89094.1 Uncharacterized protein -
  SSU05_0125 - 119024..119653 (-) 630 ABP89095.1 Uncharacterized protein -
  SSU05_0126 comYA 119727..120677 (+) 951 ABP89096.1 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Machinery gene
  SSU05_0127 comYB 120589..121626 (+) 1038 ABP89097.1 Type II secretory pathway, component PulF Machinery gene
  SSU05_0128 comYC 121628..121909 (+) 282 ABP89098.1 Competence protein ComGC Machinery gene
  SSU05_0129 - 121890..122297 (+) 408 ABP89099.1 Type II secretory pathway, pseudopilin PulG -
  SSU05_0130 comYE 122269..122562 (+) 294 ABP89100.1 Type II secretory pathway, pseudopilin PulG Machinery gene
  SSU05_0131 comGF/cglF 122549..122971 (+) 423 ABP89101.1 Competence protein ComGF Machinery gene
  SSU05_0132 - 122962..123372 (+) 411 ABP89102.1 hypothetical protein -
  SSU05_0133 comYH 123430..124404 (+) 975 ABP89104.1 Adenine-specific DNA methylase Machinery gene
  SSU05_0134 - 124202..124384 (+) 183 ABP89103.1 Adenine-specific DNA methylase -
  SSU05_0135 - 124434..125621 (+) 1188 ABP89105.1 acetate kinase -
  SSU05_0136 - 125744..126487 (+) 744 ABP89106.1 unknown protein -
  SSU05_0137 - 126543..127799 (+) 1257 ABP89107.1 putative folylpolyglutamate synthetase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 16001.35 Da        Isoelectric Point: 5.2269

>NTDB_id=20072 SSU05_0131 ABP89101.1 122549..122971(+) (comGF/cglF) [Streptococcus suis 05ZYH33]
MLKSKIPAFTLLECLVVLVILSGSLLIFEGLSKLLVQEAHYQGQTVQKEWLVFSSQLRSEWDQAELVKVENGKVYVNKGE
QALAFGKSWSDDFRKTNDRGQGYQPMLYQVDSAAISQENQLVRIDFSFKNGEERTFILCF

Nucleotide


Download         Length: 423 bp        

>NTDB_id=20072 SSU05_0131 ABP89101.1 122549..122971(+) (comGF/cglF) [Streptococcus suis 05ZYH33]
TTGTTAAAAAGTAAAATTCCTGCTTTTACACTCTTGGAATGTTTGGTGGTTCTAGTCATTCTGTCAGGTAGCCTCTTGAT
TTTTGAAGGCTTATCCAAATTACTAGTCCAGGAAGCGCATTATCAAGGTCAGACCGTTCAAAAGGAATGGTTGGTCTTCT
CTAGCCAATTGCGGTCGGAGTGGGACCAGGCTGAATTGGTCAAGGTTGAAAATGGCAAGGTCTATGTCAACAAAGGTGAA
CAGGCTTTGGCCTTTGGCAAGTCATGGTCGGATGATTTTCGGAAAACAAATGATAGAGGCCAGGGTTACCAACCCATGCT
CTATCAGGTGGATAGCGCAGCCATTTCCCAAGAAAACCAGCTGGTGCGCATCGACTTTAGCTTTAAAAACGGAGAGGAGC
GAACCTTTATCCTATGCTTTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(37-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF/cglF Streptococcus mitis NCTC 12261

52.632

95

0.5
  comGF/cglF Streptococcus pneumoniae Rx1

51.88

95

0.493
  comGF/cglF Streptococcus pneumoniae D39

51.88

95

0.493
  comGF/cglF Streptococcus pneumoniae R6

51.88

95

0.493
  comGF/cglF Streptococcus pneumoniae TIGR4

51.88

95

0.493
  comYF Streptococcus mutans UA140

47.143

100

0.471
  comGF/cglF Streptococcus mitis SK321

49.624

95

0.471
  comYF Streptococcus mutans UA159

46.429

100

0.464
  comGF Lactococcus lactis subsp. cremoris KW2

45.324

99.286

0.45

Multiple sequence alignment