Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SSU05_0127 Genome accession   CP000407
Coordinates   120589..121626 (+) Length   345 a.a.
NCBI ID   ABP89097.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 115589..126626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0123 - 118274..118663 (+) 390 ABP89093.1 Uncharacterized protein conserved in bacteria -
  SSU05_0124 - 118698..118934 (-) 237 ABP89094.1 Uncharacterized protein -
  SSU05_0125 - 119024..119653 (-) 630 ABP89095.1 Uncharacterized protein -
  SSU05_0126 comYA 119727..120677 (+) 951 ABP89096.1 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Machinery gene
  SSU05_0127 comYB 120589..121626 (+) 1038 ABP89097.1 Type II secretory pathway, component PulF Machinery gene
  SSU05_0128 comYC 121628..121909 (+) 282 ABP89098.1 Competence protein ComGC Machinery gene
  SSU05_0129 - 121890..122297 (+) 408 ABP89099.1 Type II secretory pathway, pseudopilin PulG -
  SSU05_0130 comYE 122269..122562 (+) 294 ABP89100.1 Type II secretory pathway, pseudopilin PulG Machinery gene
  SSU05_0131 comGF/cglF 122549..122971 (+) 423 ABP89101.1 Competence protein ComGF Machinery gene
  SSU05_0132 - 122962..123372 (+) 411 ABP89102.1 hypothetical protein -
  SSU05_0133 comYH 123430..124404 (+) 975 ABP89104.1 Adenine-specific DNA methylase Machinery gene
  SSU05_0134 - 124202..124384 (+) 183 ABP89103.1 Adenine-specific DNA methylase -
  SSU05_0135 - 124434..125621 (+) 1188 ABP89105.1 acetate kinase -
  SSU05_0136 - 125744..126487 (+) 744 ABP89106.1 unknown protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38954.94 Da        Isoelectric Point: 9.3127

>NTDB_id=20069 SSU05_0127 ABP89097.1 120589..121626(+) (comYB) [Streptococcus suis 05ZYH33]
MRKLIGFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLIHIQSYLENVSKVRKKLIEVATYPIILLGFLLLIMLGLKNYLLPQLEEGNAATV
LINHLPTIFLSLSGLSLVAVLAGMVWFRKTNKIKVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIVEYGQVKSKLGSELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=20069 SSU05_0127 ABP89097.1 120589..121626(+) (comYB) [Streptococcus suis 05ZYH33]
ATGCGCAAATTGATCGGCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTACCCTTGGCTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCCAGTGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGATCCCTATACCCAGGTCTTGTCAGACGGGTTGCTGGCAGGCAAACCCTTTTCGAGTTTGCTG
GCAGATTTGCGATTTTCAGATGCGGTGGTCACACAGGTGGCTCTAGCAGAAGTTCATGGTAATACCAGCCTGAGTTTGAT
TCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTGGCGACCTATCCGATTATATTGC
TTGGTTTTCTGCTTTTGATTATGCTTGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGCAATGCAGCGACAGTG
CTGATTAATCATCTACCGACCATCTTTTTATCTCTAAGTGGACTTAGTTTGGTGGCGGTCTTAGCTGGTATGGTTTGGTT
TCGCAAAACCAATAAAATTAAGGTCTTTTCCTGCTTGGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTACCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGCTTGGACCTGCCGCAGATTGTGGGCTTGATGCAAGAG
CAGCAGTCGCAGCTTTTTCGGGAGATTGGCCAGGACCTGGAGCAGTCGCTTTCCAATGGTCAGAGTTTTCACGAACACAT
TAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGTCGAGTACGGTCAGGTCAAGTCCAAGTTGGGTAGCGAGT
TGACAGTTTATGCGGCTGAATGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGCTAATCCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.743

99.13

0.632
  comGB/cglB Streptococcus mitis NCTC 12261

60.896

97.101

0.591
  comYB Streptococcus mutans UA140

59.531

98.841

0.588
  comYB Streptococcus mutans UA159

59.531

98.841

0.588
  comGB/cglB Streptococcus mitis SK321

60.597

97.101

0.588
  comGB/cglB Streptococcus pneumoniae Rx1

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae D39

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae R6

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae TIGR4

60.299

97.101

0.586
  comGB Lactococcus lactis subsp. cremoris KW2

50.445

97.681

0.493

Multiple sequence alignment