Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | Q5O_RS25010 | Genome accession | NZ_CP016212 |
| Coordinates | 5506392..5507390 (-) | Length | 332 a.a. |
| NCBI ID | WP_014592720.1 | Uniprot ID | - |
| Organism | Pseudomonas putida JB | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5501392..5512390
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q5O_RS24990 (Q5O_24990) | argS | 5502539..5504275 (+) | 1737 | WP_019439134.1 | arginine--tRNA ligase | - |
| Q5O_RS24995 (Q5O_24995) | - | 5504277..5504975 (+) | 699 | WP_014592717.1 | SPOR domain-containing protein | - |
| Q5O_RS25000 (Q5O_25000) | - | 5505066..5505485 (-) | 420 | WP_014592718.1 | NINE protein | - |
| Q5O_RS25005 (Q5O_25005) | - | 5505652..5506275 (+) | 624 | WP_053867807.1 | C40 family peptidase | - |
| Q5O_RS25010 (Q5O_25010) | pilT | 5506392..5507390 (-) | 999 | WP_014592720.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| Q5O_RS25015 (Q5O_25015) | - | 5507456..5508142 (+) | 687 | WP_019439137.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| Q5O_RS25020 (Q5O_25020) | proC | 5508181..5508999 (+) | 819 | WP_019439138.1 | pyrroline-5-carboxylate reductase | - |
| Q5O_RS25025 (Q5O_25025) | - | 5509010..5509600 (+) | 591 | WP_003249110.1 | YggT family protein | - |
| Q5O_RS25030 (Q5O_25030) | metX | 5509700..5510839 (+) | 1140 | WP_014592723.1 | homoserine O-succinyltransferase MetX | - |
| Q5O_RS25035 (Q5O_25035) | metW | 5510847..5511467 (+) | 621 | WP_003249106.1 | methionine biosynthesis protein MetW | - |
| Q5O_RS25040 (Q5O_25040) | - | 5511490..5511924 (+) | 435 | WP_019439139.1 | DUF4426 domain-containing protein | - |
Sequence
Protein
Download Length: 332 a.a. Molecular weight: 36165.85 Da Isoelectric Point: 7.4427
>NTDB_id=186223 Q5O_RS25010 WP_014592720.1 5506392..5507390(-) (pilT) [Pseudomonas putida JB]
MDVTDLLARAVDAGASDLHLATGQIPMLRLDGELQRMGLPPLSQGALIEGMASVLDDDQRRQWAQDDEMDLALELPALGR
FRLNLFRQLNGPSVTFRLIPGRIATVSELDLVDVFQSVAQCRDGLILVGGPTGSGKSSTLATLLDQLNRERALHIITLED
PVEVIHASQRSLVNQREMGRHSRGFAQGLRSALRQDPDVIMIGELRDLETIRLALRAAETGHLVLATVHARSATSCIDRL
VEVFAAEEKPLVRAMLAESLRLVVTQVLVRRVGGGRVAAREVLVATPAVRNLVREGRLAQLSSVMQGGAAEGMRTMEGAL
RRLRERGLIKGL
MDVTDLLARAVDAGASDLHLATGQIPMLRLDGELQRMGLPPLSQGALIEGMASVLDDDQRRQWAQDDEMDLALELPALGR
FRLNLFRQLNGPSVTFRLIPGRIATVSELDLVDVFQSVAQCRDGLILVGGPTGSGKSSTLATLLDQLNRERALHIITLED
PVEVIHASQRSLVNQREMGRHSRGFAQGLRSALRQDPDVIMIGELRDLETIRLALRAAETGHLVLATVHARSATSCIDRL
VEVFAAEEKPLVRAMLAESLRLVVTQVLVRRVGGGRVAAREVLVATPAVRNLVREGRLAQLSSVMQGGAAEGMRTMEGAL
RRLRERGLIKGL
Nucleotide
Download Length: 999 bp
>NTDB_id=186223 Q5O_RS25010 WP_014592720.1 5506392..5507390(-) (pilT) [Pseudomonas putida JB]
ATGGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGCCAGATTCCGAT
GCTGCGCCTGGATGGCGAGTTGCAGCGTATGGGCTTGCCGCCCTTGAGCCAGGGGGCCTTGATCGAGGGCATGGCGAGCG
TGCTGGATGACGACCAGCGCCGGCAGTGGGCCCAAGACGATGAAATGGACCTTGCGCTGGAATTGCCGGCGCTTGGGCGC
TTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGTCGGTTACCTTTCGGTTGATTCCGGGGCGCATTGCGACGGTGAG
TGAGCTGGACCTTGTGGATGTGTTTCAATCTGTTGCGCAATGCCGAGATGGTTTGATCCTCGTGGGCGGGCCGACCGGCA
GTGGCAAGTCCAGTACCCTGGCAACGCTGCTCGACCAGCTGAACCGCGAGCGGGCACTGCACATCATTACCCTGGAGGAC
CCTGTCGAAGTCATCCATGCCAGCCAGCGCAGCCTGGTCAACCAGCGTGAGATGGGGCGCCATAGTCGCGGCTTTGCTCA
GGGGCTGCGCAGTGCGCTGCGCCAGGACCCGGACGTGATCATGATCGGCGAGTTGCGCGACCTGGAAACCATTCGCCTGG
CCCTGCGCGCGGCCGAAACCGGGCACCTGGTGCTGGCAACCGTGCACGCGCGTTCGGCGACCAGCTGCATCGACAGGTTG
GTGGAGGTTTTTGCTGCCGAGGAAAAGCCGTTGGTGCGGGCGATGCTGGCCGAGTCGCTGCGCCTGGTGGTCACGCAGGT
GCTGGTCAGGCGCGTGGGGGGTGGGCGGGTGGCTGCGCGGGAAGTGCTGGTGGCGACGCCGGCGGTGCGTAACCTGGTTC
GGGAGGGGCGGTTGGCGCAGTTGTCTTCGGTGATGCAGGGCGGGGCAGCGGAGGGGATGCGGACGATGGAGGGGGCGTTG
CGGAGGCTGAGGGAGCGAGGGCTGATCAAAGGCTTGTAG
ATGGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGCCAGATTCCGAT
GCTGCGCCTGGATGGCGAGTTGCAGCGTATGGGCTTGCCGCCCTTGAGCCAGGGGGCCTTGATCGAGGGCATGGCGAGCG
TGCTGGATGACGACCAGCGCCGGCAGTGGGCCCAAGACGATGAAATGGACCTTGCGCTGGAATTGCCGGCGCTTGGGCGC
TTTCGGCTGAACCTGTTTCGCCAGTTGAATGGCCCGTCGGTTACCTTTCGGTTGATTCCGGGGCGCATTGCGACGGTGAG
TGAGCTGGACCTTGTGGATGTGTTTCAATCTGTTGCGCAATGCCGAGATGGTTTGATCCTCGTGGGCGGGCCGACCGGCA
GTGGCAAGTCCAGTACCCTGGCAACGCTGCTCGACCAGCTGAACCGCGAGCGGGCACTGCACATCATTACCCTGGAGGAC
CCTGTCGAAGTCATCCATGCCAGCCAGCGCAGCCTGGTCAACCAGCGTGAGATGGGGCGCCATAGTCGCGGCTTTGCTCA
GGGGCTGCGCAGTGCGCTGCGCCAGGACCCGGACGTGATCATGATCGGCGAGTTGCGCGACCTGGAAACCATTCGCCTGG
CCCTGCGCGCGGCCGAAACCGGGCACCTGGTGCTGGCAACCGTGCACGCGCGTTCGGCGACCAGCTGCATCGACAGGTTG
GTGGAGGTTTTTGCTGCCGAGGAAAAGCCGTTGGTGCGGGCGATGCTGGCCGAGTCGCTGCGCCTGGTGGTCACGCAGGT
GCTGGTCAGGCGCGTGGGGGGTGGGCGGGTGGCTGCGCGGGAAGTGCTGGTGGCGACGCCGGCGGTGCGTAACCTGGTTC
GGGAGGGGCGGTTGGCGCAGTTGTCTTCGGTGATGCAGGGCGGGGCAGCGGAGGGGATGCGGACGATGGAGGGGGCGTTG
CGGAGGCTGAGGGAGCGAGGGCTGATCAAAGGCTTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
51.064 |
99.096 |
0.506 |
| pilT | Acinetobacter baumannii D1279779 |
50.456 |
99.096 |
0.5 |
| pilT | Acinetobacter baumannii strain A118 |
50.456 |
99.096 |
0.5 |
| pilT | Acinetobacter nosocomialis M2 |
50.456 |
99.096 |
0.5 |
| pilT | Pseudomonas stutzeri DSM 10701 |
50.152 |
99.096 |
0.497 |
| pilT | Acinetobacter baylyi ADP1 |
50 |
99.398 |
0.497 |
| pilT | Neisseria meningitidis 8013 |
49.091 |
99.398 |
0.488 |
| pilT | Vibrio cholerae strain A1552 |
49.24 |
99.096 |
0.488 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.24 |
99.096 |
0.488 |
| pilT | Neisseria gonorrhoeae MS11 |
48.788 |
99.398 |
0.485 |
| pilT | Legionella pneumophila strain ERS1305867 |
48.328 |
99.096 |
0.479 |
| pilT | Legionella pneumophila strain Lp02 |
48.328 |
99.096 |
0.479 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
46.429 |
100 |
0.47 |
| pilU | Pseudomonas stutzeri DSM 10701 |
37.576 |
99.398 |
0.373 |