Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BS635_RS02060 Genome accession   NZ_CP018323
Coordinates   389348..389863 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain KSC9     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 384348..394863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS635_RS02035 (BS635_02025) ygaZ 384747..385484 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  BS635_RS02040 (BS635_02030) ygaH 385474..385809 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  BS635_RS02045 (BS635_02035) emrR 385900..386430 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BS635_RS02050 (BS635_02040) emrA 386557..387729 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BS635_RS02055 (BS635_02045) emrB 387746..389284 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BS635_RS02060 (BS635_02050) luxS 389348..389863 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  BS635_RS02065 (BS635_02055) gshA 390013..391569 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BS635_RS02070 (BS635_02060) yqaA 391642..392070 (-) 429 WP_001287457.1 YqaA family protein -
  BS635_RS02075 (BS635_02065) yqaB 392067..392633 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BS635_RS02105 (BS635_02095) csrA 394226..394411 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=174910 BS635_RS02060 WP_001130207.1 389348..389863(-) (luxS) [Escherichia coli strain KSC9]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=174910 BS635_RS02060 WP_001130207.1 389348..389863(-) (luxS) [Escherichia coli strain KSC9]
ATGCCGTTGTTAGATAGCTTCACTGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment