Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | HY57_RS19715 | Genome accession | NZ_CP008884 |
| Coordinates | 4627257..4628372 (+) | Length | 371 a.a. |
| NCBI ID | WP_026034230.1 | Uniprot ID | A0A075K704 |
| Organism | Dyella japonica A8 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4622257..4633372
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HY57_RS19695 (HY57_20085) | - | 4623804..4625174 (-) | 1371 | WP_019467063.1 | pyridoxal-phosphate dependent enzyme | - |
| HY57_RS19700 (HY57_20090) | - | 4625331..4625558 (-) | 228 | WP_019467062.1 | YdcH family protein | - |
| HY57_RS19705 (HY57_20095) | - | 4625965..4626582 (-) | 618 | WP_019467061.1 | DUF4398 domain-containing protein | - |
| HY57_RS19710 (HY57_20100) | - | 4626579..4627049 (-) | 471 | WP_235186592.1 | DUF4398 domain-containing protein | - |
| HY57_RS19715 (HY57_20105) | pilU | 4627257..4628372 (+) | 1116 | WP_026034230.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| HY57_RS19720 (HY57_20110) | maiA | 4628422..4629090 (-) | 669 | WP_019467058.1 | maleylacetoacetate isomerase | - |
| HY57_RS19725 (HY57_20115) | - | 4629227..4630405 (+) | 1179 | WP_026034229.1 | phosphoglycerate kinase | - |
| HY57_RS19730 (HY57_20120) | - | 4630405..4631037 (+) | 633 | WP_019467056.1 | HAD hydrolase-like protein | - |
| HY57_RS19735 (HY57_20125) | - | 4631153..4631701 (-) | 549 | WP_019467055.1 | DinB family protein | - |
Sequence
Protein
Download Length: 371 a.a. Molecular weight: 41379.51 Da Isoelectric Point: 6.3522
>NTDB_id=125446 HY57_RS19715 WP_026034230.1 4627257..4628372(+) (pilU) [Dyella japonica A8]
MDIGYFLKLMVDKGASDMFLTTGAPVNIKVEGKLYPLGNTGLPSGMVKKIAYSLMDEGQVPQFERDLELNMALAVKEAGR
FRINVFKQRGEVGMVIRAIKSEIPSIDQLQLPSIFRELIMEPRGLILVVGATGSGKSTTLAAMLDHRNQNSSGHILTIED
PIEYLHRHKRSIVNQREVGLDTHSYHEALRNAMREAPDVIMIGEIRDTDTMEAAISFSETGHLCLATLHSNNADQTLERI
LNFFPESAHKNVLMNLALNLRAVISQRLVVGKDGRRLPATEVLLNTPLIRDMIRRGQVHDVKEAMDRSLQEGMQTFDQSL
YRLYKEGRIELDEALNKADSRDGLALKIRLSDSGNPESTELVGNDPYGLGF
MDIGYFLKLMVDKGASDMFLTTGAPVNIKVEGKLYPLGNTGLPSGMVKKIAYSLMDEGQVPQFERDLELNMALAVKEAGR
FRINVFKQRGEVGMVIRAIKSEIPSIDQLQLPSIFRELIMEPRGLILVVGATGSGKSTTLAAMLDHRNQNSSGHILTIED
PIEYLHRHKRSIVNQREVGLDTHSYHEALRNAMREAPDVIMIGEIRDTDTMEAAISFSETGHLCLATLHSNNADQTLERI
LNFFPESAHKNVLMNLALNLRAVISQRLVVGKDGRRLPATEVLLNTPLIRDMIRRGQVHDVKEAMDRSLQEGMQTFDQSL
YRLYKEGRIELDEALNKADSRDGLALKIRLSDSGNPESTELVGNDPYGLGF
Nucleotide
Download Length: 1116 bp
>NTDB_id=125446 HY57_RS19715 WP_026034230.1 4627257..4628372(+) (pilU) [Dyella japonica A8]
GTGGATATCGGTTATTTCCTCAAGCTAATGGTTGACAAGGGCGCGTCGGATATGTTCCTGACGACGGGCGCCCCTGTGAA
CATTAAGGTCGAGGGCAAGCTTTACCCGCTGGGCAATACCGGCCTTCCCAGCGGCATGGTGAAGAAAATCGCTTACTCGC
TGATGGACGAAGGCCAGGTTCCCCAGTTCGAGCGCGACCTGGAACTGAACATGGCGCTGGCGGTGAAGGAAGCCGGCCGT
TTCCGCATCAACGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTCATCCGTGCCATCAAGAGCGAGATCCCCAGCATCGA
CCAGCTGCAGCTGCCGAGCATCTTCCGTGAGCTGATCATGGAGCCGCGCGGCCTGATTCTGGTGGTCGGCGCCACCGGTT
CGGGCAAGTCGACCACCCTGGCCGCGATGCTCGACCACCGCAACCAGAACTCCTCGGGCCACATCCTCACCATCGAGGAC
CCGATCGAGTACCTGCACCGCCACAAGCGGTCGATCGTCAACCAGCGCGAAGTCGGCCTGGATACGCACAGCTATCACGA
GGCCCTGCGCAACGCGATGCGCGAAGCGCCGGACGTGATCATGATCGGCGAAATCCGCGACACCGACACCATGGAAGCGG
CCATTTCGTTCTCCGAAACCGGCCATCTCTGCCTTGCCACCCTGCACTCGAACAACGCCGACCAGACGCTGGAGCGCATC
CTCAACTTCTTCCCGGAATCGGCGCACAAGAACGTGCTGATGAACCTCGCGCTCAACCTGCGCGCGGTGATCAGCCAGCG
CCTGGTGGTGGGCAAGGACGGCCGCCGCCTGCCGGCGACGGAAGTGCTGCTCAACACGCCGCTGATCCGCGACATGATCC
GCCGCGGCCAGGTGCACGACGTCAAGGAAGCCATGGACCGCAGCCTGCAGGAAGGCATGCAGACCTTCGACCAGTCGCTG
TACCGCCTGTACAAGGAAGGCCGCATCGAGCTGGACGAAGCGCTCAACAAGGCGGACTCCCGCGATGGCCTGGCGCTCAA
GATCCGCCTGTCCGACAGCGGCAACCCGGAAAGCACCGAGCTGGTCGGCAACGACCCCTACGGTCTGGGCTTCTGA
GTGGATATCGGTTATTTCCTCAAGCTAATGGTTGACAAGGGCGCGTCGGATATGTTCCTGACGACGGGCGCCCCTGTGAA
CATTAAGGTCGAGGGCAAGCTTTACCCGCTGGGCAATACCGGCCTTCCCAGCGGCATGGTGAAGAAAATCGCTTACTCGC
TGATGGACGAAGGCCAGGTTCCCCAGTTCGAGCGCGACCTGGAACTGAACATGGCGCTGGCGGTGAAGGAAGCCGGCCGT
TTCCGCATCAACGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTCATCCGTGCCATCAAGAGCGAGATCCCCAGCATCGA
CCAGCTGCAGCTGCCGAGCATCTTCCGTGAGCTGATCATGGAGCCGCGCGGCCTGATTCTGGTGGTCGGCGCCACCGGTT
CGGGCAAGTCGACCACCCTGGCCGCGATGCTCGACCACCGCAACCAGAACTCCTCGGGCCACATCCTCACCATCGAGGAC
CCGATCGAGTACCTGCACCGCCACAAGCGGTCGATCGTCAACCAGCGCGAAGTCGGCCTGGATACGCACAGCTATCACGA
GGCCCTGCGCAACGCGATGCGCGAAGCGCCGGACGTGATCATGATCGGCGAAATCCGCGACACCGACACCATGGAAGCGG
CCATTTCGTTCTCCGAAACCGGCCATCTCTGCCTTGCCACCCTGCACTCGAACAACGCCGACCAGACGCTGGAGCGCATC
CTCAACTTCTTCCCGGAATCGGCGCACAAGAACGTGCTGATGAACCTCGCGCTCAACCTGCGCGCGGTGATCAGCCAGCG
CCTGGTGGTGGGCAAGGACGGCCGCCGCCTGCCGGCGACGGAAGTGCTGCTCAACACGCCGCTGATCCGCGACATGATCC
GCCGCGGCCAGGTGCACGACGTCAAGGAAGCCATGGACCGCAGCCTGCAGGAAGGCATGCAGACCTTCGACCAGTCGCTG
TACCGCCTGTACAAGGAAGGCCGCATCGAGCTGGACGAAGCGCTCAACAAGGCGGACTCCCGCGATGGCCTGGCGCTCAA
GATCCGCCTGTCCGACAGCGGCAACCCGGAAAGCACCGAGCTGGTCGGCAACGACCCCTACGGTCTGGGCTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
50.559 |
96.496 |
0.488 |
| pilU | Acinetobacter baylyi ADP1 |
49.86 |
96.226 |
0.48 |
| pilU | Vibrio cholerae strain A1552 |
49.714 |
94.34 |
0.469 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.838 |
91.375 |
0.41 |
| pilT | Acinetobacter baylyi ADP1 |
42.059 |
91.644 |
0.385 |
| pilT | Acinetobacter baumannii D1279779 |
41.716 |
91.105 |
0.38 |
| pilT | Acinetobacter nosocomialis M2 |
41.716 |
91.105 |
0.38 |
| pilT | Pseudomonas stutzeri DSM 10701 |
41.716 |
91.105 |
0.38 |
| pilT | Acinetobacter baumannii strain A118 |
41.716 |
91.105 |
0.38 |
| pilT | Pseudomonas aeruginosa PAK |
41.42 |
91.105 |
0.377 |
| pilT | Legionella pneumophila strain ERS1305867 |
40.643 |
92.183 |
0.375 |
| pilT | Legionella pneumophila strain Lp02 |
40.643 |
92.183 |
0.375 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.059 |
90.836 |
0.364 |
| pilT | Vibrio cholerae strain A1552 |
40.059 |
90.836 |
0.364 |