Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | SLP02_RS16340 | Genome accession | NZ_OY762512 |
| Coordinates | 3356372..3357481 (+) | Length | 369 a.a. |
| NCBI ID | WP_319421760.1 | Uniprot ID | - |
| Organism | Pleurocapsa sp. FMAR1 isolate 44838 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3351372..3362481
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SLP02_RS16330 | grpE | 3353244..3353987 (-) | 744 | WP_319421757.1 | nucleotide exchange factor GrpE | - |
| SLP02_RS16335 | pilB/pilB1 | 3354291..3356297 (+) | 2007 | WP_319421759.1 | GspE/PulE family protein | Machinery gene |
| SLP02_RS16340 | pilT | 3356372..3357481 (+) | 1110 | WP_319421760.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| SLP02_RS16345 | - | 3357645..3358859 (+) | 1215 | WP_319421762.1 | type II secretion system F family protein | - |
| SLP02_RS16350 | - | 3358900..3359478 (+) | 579 | WP_319421763.1 | hypothetical protein | - |
| SLP02_RS16355 | - | 3359596..3360225 (-) | 630 | WP_319421765.1 | hypothetical protein | - |
| SLP02_RS16360 | hpf | 3360449..3361060 (-) | 612 | WP_319421767.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| SLP02_RS16365 | lipB | 3361582..3362268 (+) | 687 | WP_319421768.1 | lipoyl(octanoyl) transferase LipB | - |
Sequence
Protein
Download Length: 369 a.a. Molecular weight: 40559.83 Da Isoelectric Point: 7.4438
>NTDB_id=1161604 SLP02_RS16340 WP_319421760.1 3356372..3357481(+) (pilT) [Pleurocapsa sp. FMAR1 isolate 44838]
MDLMIEDLMEQLVEMGGSDMHVQASAPVYFRISGKLTPIGENLNPQECQRLIFSMLNNNQRKELEQHWELDCSYGVKGLA
RFRVNVYKERGSYAACLRALSSKIPNFDQLGLPDVIRRTTERPRGLVLVTGPTGSGKTTTLAAMLDLINRTRGEHILTVE
DPIEYVFDNVKSLFHQRQKGEDTKSFANALKAALREDPDIILVGEMRDLETISLAISAAETGHLVFGTLHTNSASGTVDR
IIDVFPAGQQAQIRAMLSNSLIAVFSQTLVKKKSPKPGEFGRVMAQEIMIVTPAIANLIREGKAAMVYSAIQTGAKMEMQ
TMEQALAELVKKGIVSMEEGIAKSSRPDELQRLTGAVAGMGMAANAKRH
MDLMIEDLMEQLVEMGGSDMHVQASAPVYFRISGKLTPIGENLNPQECQRLIFSMLNNNQRKELEQHWELDCSYGVKGLA
RFRVNVYKERGSYAACLRALSSKIPNFDQLGLPDVIRRTTERPRGLVLVTGPTGSGKTTTLAAMLDLINRTRGEHILTVE
DPIEYVFDNVKSLFHQRQKGEDTKSFANALKAALREDPDIILVGEMRDLETISLAISAAETGHLVFGTLHTNSASGTVDR
IIDVFPAGQQAQIRAMLSNSLIAVFSQTLVKKKSPKPGEFGRVMAQEIMIVTPAIANLIREGKAAMVYSAIQTGAKMEMQ
TMEQALAELVKKGIVSMEEGIAKSSRPDELQRLTGAVAGMGMAANAKRH
Nucleotide
Download Length: 1110 bp
>NTDB_id=1161604 SLP02_RS16340 WP_319421760.1 3356372..3357481(+) (pilT) [Pleurocapsa sp. FMAR1 isolate 44838]
ATGGATTTAATGATTGAAGACTTGATGGAGCAACTGGTAGAAATGGGTGGCTCAGATATGCACGTTCAGGCTAGTGCGCC
AGTCTATTTTCGGATCAGTGGCAAATTAACCCCTATTGGCGAAAATCTTAATCCTCAAGAGTGCCAAAGATTGATTTTTA
GTATGCTCAACAACAACCAAAGAAAGGAATTGGAGCAGCACTGGGAATTAGATTGTTCTTACGGTGTCAAAGGACTGGCT
CGTTTTCGGGTCAATGTTTACAAAGAGCGAGGCTCTTATGCAGCTTGTTTACGGGCATTATCTTCTAAAATCCCTAACTT
CGATCAGTTGGGTTTACCTGATGTAATTAGACGAACTACCGAAAGACCAAGGGGACTTGTCTTGGTAACTGGACCAACAG
GCTCAGGCAAAACTACCACCCTGGCAGCGATGCTCGATTTAATCAACCGTACCAGAGGTGAGCATATCCTAACGGTAGAA
GACCCGATTGAATATGTCTTTGATAACGTTAAAAGCTTATTCCACCAGCGACAGAAGGGAGAAGATACCAAAAGCTTTGC
TAACGCCTTAAAAGCAGCACTACGGGAAGATCCAGACATCATTCTGGTAGGAGAGATGCGGGATTTGGAAACAATTTCTC
TGGCAATCTCCGCAGCCGAAACAGGTCACCTAGTATTTGGCACTCTGCATACTAACTCTGCTTCAGGAACAGTCGATCGG
ATAATTGATGTTTTTCCCGCAGGTCAACAGGCACAAATTCGCGCCATGCTGTCTAACTCCTTAATTGCTGTATTTAGTCA
AACCCTAGTTAAAAAGAAAAGTCCTAAGCCTGGCGAGTTTGGAAGAGTCATGGCACAGGAAATCATGATCGTCACTCCAG
CGATCGCCAATTTAATCCGCGAAGGAAAAGCAGCAATGGTCTATTCTGCCATTCAAACAGGAGCAAAAATGGAGATGCAA
ACTATGGAACAAGCTTTAGCTGAGCTTGTTAAAAAAGGCATCGTCAGTATGGAAGAAGGAATAGCAAAAAGTTCTCGACC
CGATGAGCTACAGCGTCTTACAGGTGCTGTAGCGGGCATGGGGATGGCAGCAAATGCCAAGCGTCATTAA
ATGGATTTAATGATTGAAGACTTGATGGAGCAACTGGTAGAAATGGGTGGCTCAGATATGCACGTTCAGGCTAGTGCGCC
AGTCTATTTTCGGATCAGTGGCAAATTAACCCCTATTGGCGAAAATCTTAATCCTCAAGAGTGCCAAAGATTGATTTTTA
GTATGCTCAACAACAACCAAAGAAAGGAATTGGAGCAGCACTGGGAATTAGATTGTTCTTACGGTGTCAAAGGACTGGCT
CGTTTTCGGGTCAATGTTTACAAAGAGCGAGGCTCTTATGCAGCTTGTTTACGGGCATTATCTTCTAAAATCCCTAACTT
CGATCAGTTGGGTTTACCTGATGTAATTAGACGAACTACCGAAAGACCAAGGGGACTTGTCTTGGTAACTGGACCAACAG
GCTCAGGCAAAACTACCACCCTGGCAGCGATGCTCGATTTAATCAACCGTACCAGAGGTGAGCATATCCTAACGGTAGAA
GACCCGATTGAATATGTCTTTGATAACGTTAAAAGCTTATTCCACCAGCGACAGAAGGGAGAAGATACCAAAAGCTTTGC
TAACGCCTTAAAAGCAGCACTACGGGAAGATCCAGACATCATTCTGGTAGGAGAGATGCGGGATTTGGAAACAATTTCTC
TGGCAATCTCCGCAGCCGAAACAGGTCACCTAGTATTTGGCACTCTGCATACTAACTCTGCTTCAGGAACAGTCGATCGG
ATAATTGATGTTTTTCCCGCAGGTCAACAGGCACAAATTCGCGCCATGCTGTCTAACTCCTTAATTGCTGTATTTAGTCA
AACCCTAGTTAAAAAGAAAAGTCCTAAGCCTGGCGAGTTTGGAAGAGTCATGGCACAGGAAATCATGATCGTCACTCCAG
CGATCGCCAATTTAATCCGCGAAGGAAAAGCAGCAATGGTCTATTCTGCCATTCAAACAGGAGCAAAAATGGAGATGCAA
ACTATGGAACAAGCTTTAGCTGAGCTTGTTAAAAAAGGCATCGTCAGTATGGAAGAAGGAATAGCAAAAAGTTCTCGACC
CGATGAGCTACAGCGTCTTACAGGTGCTGTAGCGGGCATGGGGATGGCAGCAAATGCCAAGCGTCATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
52.436 |
94.58 |
0.496 |
| pilT | Acinetobacter baylyi ADP1 |
52.161 |
94.038 |
0.491 |
| pilT | Legionella pneumophila strain Lp02 |
53.731 |
90.786 |
0.488 |
| pilT | Legionella pneumophila strain ERS1305867 |
53.731 |
90.786 |
0.488 |
| pilT | Acinetobacter baumannii D1279779 |
51.297 |
94.038 |
0.482 |
| pilT | Acinetobacter baumannii strain A118 |
51.297 |
94.038 |
0.482 |
| pilT | Acinetobacter nosocomialis M2 |
51.297 |
94.038 |
0.482 |
| pilT | Pseudomonas stutzeri DSM 10701 |
50.72 |
94.038 |
0.477 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
50.298 |
91.057 |
0.458 |
| pilT | Vibrio cholerae strain A1552 |
50.298 |
91.057 |
0.458 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
46.409 |
98.103 |
0.455 |
| pilT | Neisseria meningitidis 8013 |
48.368 |
91.328 |
0.442 |
| pilT | Neisseria gonorrhoeae MS11 |
48.368 |
91.328 |
0.442 |