Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SLP02_RS16335 Genome accession   NZ_OY762512
Coordinates   3354291..3356297 (+) Length   668 a.a.
NCBI ID   WP_319421759.1    Uniprot ID   -
Organism   Pleurocapsa sp. FMAR1 isolate 44838     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3349291..3361297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLP02_RS16315 - 3349571..3349852 (-) 282 WP_319421754.1 sulfurtransferase TusA family protein -
  SLP02_RS16320 dnaJ 3349849..3350985 (-) 1137 WP_319421755.1 molecular chaperone DnaJ -
  SLP02_RS16325 dnaK 3351102..3353090 (-) 1989 WP_319421756.1 molecular chaperone DnaK -
  SLP02_RS16330 grpE 3353244..3353987 (-) 744 WP_319421757.1 nucleotide exchange factor GrpE -
  SLP02_RS16335 pilB/pilB1 3354291..3356297 (+) 2007 WP_319421759.1 GspE/PulE family protein Machinery gene
  SLP02_RS16340 pilT 3356372..3357481 (+) 1110 WP_319421760.1 type IV pilus twitching motility protein PilT Machinery gene
  SLP02_RS16345 - 3357645..3358859 (+) 1215 WP_319421762.1 type II secretion system F family protein -
  SLP02_RS16350 - 3358900..3359478 (+) 579 WP_319421763.1 hypothetical protein -
  SLP02_RS16355 - 3359596..3360225 (-) 630 WP_319421765.1 hypothetical protein -
  SLP02_RS16360 hpf 3360449..3361060 (-) 612 WP_319421767.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 74694.73 Da        Isoelectric Point: 5.5885

>NTDB_id=1161603 SLP02_RS16335 WP_319421759.1 3354291..3356297(+) (pilB/pilB1) [Pleurocapsa sp. FMAR1 isolate 44838]
MAYSSSSKKTRAIALRNNLSPFGNQLVQKGFIDGNEMQKALAESRKTGRSLVDILESSTGKQLPPDLLRQYKRHHLFELK
VLFGVESADLELETDQLNNNQMGELINSLISLDICRRYRLIPIRKEEEPATLVVAMVDPENLEAQDDLNRILRPKKINVK
RLVITQADYQQLIDQFLDEQVKKETAKKKEVNVDVSLELDNFEFNLEDAEDELADDLGAANEAQAAPIITLVNKILAKAL
QEGVSDIHIEPQEESLKIRYRKDSVLQQPFDKMPKKIIPAVVARFKIMAELDIAEKRLPQDGKIRRMFQGRKVDFRVNTL
PSRYGEKVVLRILDNTATQLGLDKLISHEPTLEIVRDMAKRPFGLILVTGPTGSGKSTSLYSVLAERNSPDVNICTAEDP
IEYSLDGITQVQVIREKGMNFASILRAFLRQDPDVILVGETRDSETAKTAIEAALTGHLVLTTLHTNDAAGAIARLDEMG
VEPFMISGALLGVLAQRLMRKVCSECRIAYNPTRAELSRFGLSAAAEEEVTFFKANKLDVEQMSKAKANGSICPKCSGVG
YKGRIGVYEVMKNSERLESLINQGANTDRLKEVAIEEGMITILAYSLNLVKEGQTTLEEVERVTFSDSSVEAERKSKQKS
SLTCRTCSAELQPEWLDCPYCMTPRFSK

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=1161603 SLP02_RS16335 WP_319421759.1 3354291..3356297(+) (pilB/pilB1) [Pleurocapsa sp. FMAR1 isolate 44838]
ATGGCTTATTCTTCCTCTTCTAAAAAAACTAGGGCGATCGCTTTACGTAACAATCTATCTCCTTTTGGAAACCAATTGGT
TCAAAAAGGATTTATTGATGGTAACGAAATGCAGAAGGCTTTAGCTGAAAGTCGCAAAACTGGTCGTTCCTTGGTAGATA
TCCTCGAATCATCTACAGGTAAACAATTACCACCAGATTTATTACGCCAGTATAAGAGACACCATTTATTTGAACTCAAG
GTTTTGTTTGGCGTAGAGTCGGCAGATCTAGAGTTAGAAACAGACCAGCTTAACAATAATCAAATGGGGGAATTAATCAA
TTCTTTAATTTCCTTGGATATTTGCCGTCGTTATCGATTGATCCCCATCAGAAAAGAAGAAGAACCAGCGACACTCGTGG
TAGCAATGGTTGACCCTGAAAACTTGGAGGCTCAGGACGATCTCAACCGTATTCTTCGACCCAAAAAAATTAATGTTAAA
CGATTAGTTATTACCCAAGCTGACTATCAGCAGTTAATCGATCAATTTTTAGACGAGCAGGTTAAAAAAGAAACCGCCAA
GAAAAAAGAAGTTAACGTTGATGTTTCTTTAGAATTAGACAATTTTGAGTTTAATTTGGAAGATGCAGAGGACGAGCTTG
CTGATGATTTGGGTGCTGCTAATGAGGCACAGGCAGCACCGATCATTACTCTAGTTAATAAAATTCTGGCAAAAGCATTA
CAAGAAGGAGTTTCTGATATTCACATCGAACCCCAAGAAGAAAGTCTGAAAATCCGTTATCGCAAGGACAGCGTTTTGCA
GCAGCCTTTTGATAAGATGCCGAAAAAGATTATTCCTGCGGTAGTAGCTCGCTTCAAGATTATGGCAGAGTTAGACATTG
CCGAAAAACGCTTGCCCCAGGATGGCAAGATTCGCCGTATGTTCCAGGGTCGAAAAGTAGATTTTCGGGTTAATACCTTG
CCCAGTCGCTACGGAGAAAAGGTAGTACTCAGGATTTTAGATAACACAGCTACTCAGCTAGGTCTTGATAAGCTGATTTC
TCATGAGCCTACTTTAGAAATAGTTCGGGACATGGCAAAACGTCCCTTTGGTTTAATTCTGGTAACAGGACCTACTGGTT
CGGGTAAATCTACAAGTCTTTACTCCGTTTTAGCAGAAAGAAATAGTCCTGACGTTAACATTTGTACTGCTGAAGATCCG
ATTGAATACTCCCTAGATGGGATTACTCAAGTACAGGTAATACGGGAAAAAGGCATGAACTTTGCCTCAATTCTGCGGGC
TTTTTTAAGACAAGATCCTGACGTTATCTTAGTCGGTGAGACTAGAGACTCAGAAACCGCTAAAACGGCGATTGAAGCTG
CCCTCACGGGTCACCTGGTATTAACTACACTACACACCAATGATGCTGCTGGTGCGATCGCTCGTCTCGATGAAATGGGG
GTAGAGCCATTTATGATCTCTGGAGCATTGCTAGGAGTATTAGCTCAAAGACTAATGCGTAAAGTCTGTAGCGAATGTCG
TATAGCCTATAATCCGACGCGCGCCGAGTTATCTAGATTTGGATTATCCGCAGCCGCAGAAGAGGAAGTTACGTTTTTCA
AAGCCAATAAGCTGGATGTAGAACAGATGTCTAAGGCAAAAGCCAATGGCAGCATCTGTCCTAAATGTTCTGGGGTGGGA
TATAAGGGCAGAATTGGTGTTTACGAAGTCATGAAAAATTCCGAAAGATTGGAAAGCTTAATTAACCAAGGAGCAAACAC
CGATCGCCTTAAAGAAGTAGCAATCGAAGAAGGGATGATTACCATCCTGGCATACAGCTTAAATCTAGTCAAAGAAGGTC
AAACCACCCTCGAAGAAGTAGAGCGGGTCACATTTAGCGATTCTAGCGTGGAAGCGGAGCGCAAGTCCAAGCAAAAAAGT
AGCCTGACTTGTCGTACCTGTAGTGCCGAGCTACAGCCTGAGTGGTTGGATTGTCCTTATTGTATGACCCCTCGCTTTAG
CAAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(234-501)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(26-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

66.765

100

0.677

Multiple sequence alignment