Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   BUC38_RS00780 Genome accession   NZ_LT671674
Coordinates   129722..130003 (+) Length   93 a.a.
NCBI ID   WP_024376296.1    Uniprot ID   A0A0Z8NQJ2
Organism   Streptococcus suis strain LS9N     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 124722..135003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS00760 - 126238..126603 (+) 366 WP_029998791.1 DUF1033 family protein -
  BUC38_RS00765 - 126638..127549 (-) 912 Protein_113 S66 peptidase family protein -
  BUC38_RS00770 comYA 127821..128771 (+) 951 WP_044690427.1 competence type IV pilus ATPase ComGA Machinery gene
  BUC38_RS00775 comYB 128683..129720 (+) 1038 WP_044690426.1 competence type IV pilus assembly protein ComGB Machinery gene
  BUC38_RS00780 comYC 129722..130003 (+) 282 WP_024376296.1 competence type IV pilus major pilin ComGC Machinery gene
  BUC38_RS00785 comGD 129984..130391 (+) 408 WP_004195585.1 competence type IV pilus minor pilin ComGD -
  BUC38_RS00790 comYE 130363..130656 (+) 294 WP_044690424.1 competence type IV pilus minor pilin ComGE Machinery gene
  BUC38_RS00795 comGF/cglF 130643..131077 (+) 435 WP_044690423.1 competence type IV pilus minor pilin ComGF Machinery gene
  BUC38_RS00800 comGG 131055..131567 (+) 513 WP_061704561.1 competence type IV pilus minor pilin ComGG -
  BUC38_RS00805 - 131797..133866 (+) 2070 WP_052503068.1 GBS Bsp-like repeat-containing protein -
  BUC38_RS00810 - 134120..134923 (+) 804 WP_044690213.1 ABC transporter permease -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10402.41 Da        Isoelectric Point: 9.7128

>NTDB_id=1145974 BUC38_RS00780 WP_024376296.1 129722..130003(+) (comYC) [Streptococcus suis strain LS9N]
MKKLLKLKKKAFTLVEMLVVLGIISLLLLIFVPNLSKQKAAVQEKGNAAVVKVVESQMELYELEHDKEATVADLQADGYI
TEKQAEQYAKAKK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=1145974 BUC38_RS00780 WP_024376296.1 129722..130003(+) (comYC) [Streptococcus suis strain LS9N]
ATGAAAAAATTGTTGAAATTAAAAAAGAAAGCTTTCACTCTGGTGGAAATGTTAGTTGTTTTGGGTATTATTAGCCTGCT
CTTGCTCATTTTTGTGCCTAATTTGAGCAAGCAAAAAGCAGCTGTTCAAGAGAAAGGAAATGCTGCCGTTGTCAAAGTAG
TAGAGAGCCAGATGGAGCTCTATGAATTGGAACATGACAAGGAAGCAACGGTGGCAGACTTGCAAGCGGATGGCTATATT
ACTGAAAAACAAGCGGAGCAGTATGCTAAGGCGAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8NQJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus suis isolate S10

83.871

100

0.839
  comGC/cglC Streptococcus pneumoniae TIGR4

66.304

98.925

0.656
  comGC/cglC Streptococcus pneumoniae Rx1

66.304

98.925

0.656
  comGC/cglC Streptococcus pneumoniae D39

66.304

98.925

0.656
  comGC/cglC Streptococcus pneumoniae R6

66.304

98.925

0.656
  comGC/cglC Streptococcus mitis NCTC 12261

66.304

98.925

0.656
  comGC/cglC Streptococcus mitis SK321

66.304

98.925

0.656
  comYC Streptococcus gordonii str. Challis substr. CH1

66.292

95.699

0.634
  comYC Streptococcus mutans UA140

60.227

94.624

0.57
  comYC Streptococcus mutans UA159

60.227

94.624

0.57
  comGC Lactococcus lactis subsp. cremoris KW2

59.091

94.624

0.559
  comGC Staphylococcus aureus MW2

52.941

91.398

0.484
  comGC Staphylococcus aureus N315

52.941

91.398

0.484
  comGC Bacillus subtilis subsp. subtilis str. 168

46.667

80.645

0.376
  comGC Latilactobacillus sakei subsp. sakei 23K

42.5

86.022

0.366

Multiple sequence alignment