Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   BUC38_RS00790 Genome accession   NZ_LT671674
Coordinates   130363..130656 (+) Length   97 a.a.
NCBI ID   WP_044690424.1    Uniprot ID   -
Organism   Streptococcus suis strain LS9N     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 125363..135656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS00760 - 126238..126603 (+) 366 WP_029998791.1 DUF1033 family protein -
  BUC38_RS00765 - 126638..127549 (-) 912 Protein_113 S66 peptidase family protein -
  BUC38_RS00770 comYA 127821..128771 (+) 951 WP_044690427.1 competence type IV pilus ATPase ComGA Machinery gene
  BUC38_RS00775 comYB 128683..129720 (+) 1038 WP_044690426.1 competence type IV pilus assembly protein ComGB Machinery gene
  BUC38_RS00780 comYC 129722..130003 (+) 282 WP_024376296.1 competence type IV pilus major pilin ComGC Machinery gene
  BUC38_RS00785 comGD 129984..130391 (+) 408 WP_004195585.1 competence type IV pilus minor pilin ComGD -
  BUC38_RS00790 comYE 130363..130656 (+) 294 WP_044690424.1 competence type IV pilus minor pilin ComGE Machinery gene
  BUC38_RS00795 comGF/cglF 130643..131077 (+) 435 WP_044690423.1 competence type IV pilus minor pilin ComGF Machinery gene
  BUC38_RS00800 comGG 131055..131567 (+) 513 WP_061704561.1 competence type IV pilus minor pilin ComGG -
  BUC38_RS00805 - 131797..133866 (+) 2070 WP_052503068.1 GBS Bsp-like repeat-containing protein -
  BUC38_RS00810 - 134120..134923 (+) 804 WP_044690213.1 ABC transporter permease -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10834.73 Da        Isoelectric Point: 9.6873

>NTDB_id=1145975 BUC38_RS00790 WP_044690424.1 130363..130656(+) (comYE) [Streptococcus suis strain LS9N]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLDLAQMAVQTKQDYLALNGVTVQVQRTAE
RVAVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1145975 BUC38_RS00790 WP_044690424.1 130363..130656(+) (comYE) [Streptococcus suis strain LS9N]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACCTTAGTGACTAT
TTGTAGCTTGATTTTGTCAGCGGTGGATGCTGGTCGCAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCGATC
TAGCACAGATGGCTGTCCAGACCAAACAAGATTATTTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACGGCGGAA
AGAGTTGCGGTTTTCCACGAGGGAAAGGAGGTTCTATCAGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

52.577

100

0.526
  comYE Streptococcus mutans UA159

52.577

100

0.526
  comGE/cglE Streptococcus pneumoniae Rx1

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae D39

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae TIGR4

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis NCTC 12261

39.13

94.845

0.371

Multiple sequence alignment