Detailed information
Bioinformatically predicted
Overview
| Name | comYB | Type | Machinery gene |
| Locus tag | BUC38_RS00775 | Genome accession | NZ_LT671674 |
| Coordinates | 128683..129720 (+) | Length | 345 a.a. |
| NCBI ID | WP_044690426.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain LS9N | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 123683..134720
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BUC38_RS00760 | - | 126238..126603 (+) | 366 | WP_029998791.1 | DUF1033 family protein | - |
| BUC38_RS00765 | - | 126638..127549 (-) | 912 | Protein_113 | S66 peptidase family protein | - |
| BUC38_RS00770 | comYA | 127821..128771 (+) | 951 | WP_044690427.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| BUC38_RS00775 | comYB | 128683..129720 (+) | 1038 | WP_044690426.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| BUC38_RS00780 | comYC | 129722..130003 (+) | 282 | WP_024376296.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BUC38_RS00785 | comGD | 129984..130391 (+) | 408 | WP_004195585.1 | competence type IV pilus minor pilin ComGD | - |
| BUC38_RS00790 | comYE | 130363..130656 (+) | 294 | WP_044690424.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| BUC38_RS00795 | comGF/cglF | 130643..131077 (+) | 435 | WP_044690423.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| BUC38_RS00800 | comGG | 131055..131567 (+) | 513 | WP_061704561.1 | competence type IV pilus minor pilin ComGG | - |
| BUC38_RS00805 | - | 131797..133866 (+) | 2070 | WP_052503068.1 | GBS Bsp-like repeat-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38948.91 Da Isoelectric Point: 9.3364
>NTDB_id=1145973 BUC38_RS00775 WP_044690426.1 128683..129720(+) (comYB) [Streptococcus suis strain LS9N]
MRKLIGFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLGFLLLIMLGLKNYLLPQLEEGNVATV
LINHLPTIFLSLCGLSLVAVMSSLVWFRKTNKIKVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQS
QQSQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIAEYGQVKSKLGSELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL
MRKLIGFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLGFLLLIMLGLKNYLLPQLEEGNVATV
LINHLPTIFLSLCGLSLVAVMSSLVWFRKTNKIKVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQS
QQSQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIAEYGQVKSKLGSELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL
Nucleotide
Download Length: 1038 bp
>NTDB_id=1145973 BUC38_RS00775 WP_044690426.1 128683..129720(+) (comYB) [Streptococcus suis strain LS9N]
ATGCGCAAATTGATCGGCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCTAGTGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAGC
GTAGTCAGCTTCTGGCAGATCCCTACACTCAGGTCTTGTCAGATGGGTTGCTTGCAGGCAAACCCTTTTCAAGCCTATTA
GCGGATTTGCGGTTTTCAGATGCGGTGGTCACACAGGTGGCTCTGGCAGAGGTTCATGGCAATACCAGCCTGAGTTTGAG
CCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTAGCGACCTATCCGATAATCTTGC
TTGGTTTTCTGCTCTTGATAATGCTGGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGTAATGTAGCGACCGTG
CTGATCAACCATCTGCCGACTATCTTCTTGTCCCTTTGTGGTCTGAGTTTAGTGGCGGTCATGTCTAGTCTGGTTTGGTT
TCGAAAAACTAACAAAATCAAGGTCTTTTCCTGCTTAGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTACCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGTTTGGACCTGCCGCAGATTGTGGGCTTGATGCAATCG
CAGCAATCGCAACTCTTTCGGGAGATTGGCCAGGACCTGGAGCAGTCGCTTTCCAATGGTCAGAGCTTTCACGAACACAT
TAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGCCGAGTATGGTCAGGTCAAGTCTAAGTTGGGGAGCGAGT
TGACAGTTTATGCGGCTGAGTGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGCTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTATAA
ATGCGCAAATTGATCGGCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCTAGTGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAGC
GTAGTCAGCTTCTGGCAGATCCCTACACTCAGGTCTTGTCAGATGGGTTGCTTGCAGGCAAACCCTTTTCAAGCCTATTA
GCGGATTTGCGGTTTTCAGATGCGGTGGTCACACAGGTGGCTCTGGCAGAGGTTCATGGCAATACCAGCCTGAGTTTGAG
CCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTAGCGACCTATCCGATAATCTTGC
TTGGTTTTCTGCTCTTGATAATGCTGGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGTAATGTAGCGACCGTG
CTGATCAACCATCTGCCGACTATCTTCTTGTCCCTTTGTGGTCTGAGTTTAGTGGCGGTCATGTCTAGTCTGGTTTGGTT
TCGAAAAACTAACAAAATCAAGGTCTTTTCCTGCTTAGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTACCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGTTTGGACCTGCCGCAGATTGTGGGCTTGATGCAATCG
CAGCAATCGCAACTCTTTCGGGAGATTGGCCAGGACCTGGAGCAGTCGCTTTCCAATGGTCAGAGCTTTCACGAACACAT
TAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGCCGAGTATGGTCAGGTCAAGTCTAAGTTGGGGAGCGAGT
TGACAGTTTATGCGGCTGAGTGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGCTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYB | Streptococcus gordonii str. Challis substr. CH1 |
63.158 |
99.13 |
0.626 |
| comGB/cglB | Streptococcus mitis NCTC 12261 |
60.597 |
97.101 |
0.588 |
| comGB/cglB | Streptococcus mitis SK321 |
60.299 |
97.101 |
0.586 |
| comGB/cglB | Streptococcus pneumoniae Rx1 |
60 |
97.101 |
0.583 |
| comGB/cglB | Streptococcus pneumoniae D39 |
60 |
97.101 |
0.583 |
| comGB/cglB | Streptococcus pneumoniae R6 |
60 |
97.101 |
0.583 |
| comGB/cglB | Streptococcus pneumoniae TIGR4 |
60 |
97.101 |
0.583 |
| comYB | Streptococcus mutans UA159 |
59.292 |
98.261 |
0.583 |
| comYB | Streptococcus mutans UA140 |
59.292 |
98.261 |
0.583 |
| comGB | Lactococcus lactis subsp. cremoris KW2 |
50.742 |
97.681 |
0.496 |