Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | DQM60_RS09580 | Genome accession | NZ_LS483366 |
| Coordinates | 2037330..2037644 (-) | Length | 104 a.a. |
| NCBI ID | WP_037611125.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius strain NCTC7366 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2032330..2042644
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM60_RS09540 (NCTC7366_01932) | - | 2032594..2033250 (-) | 657 | WP_037601483.1 | CPBP family intramembrane glutamic endopeptidase | - |
| DQM60_RS09545 (NCTC7366_01933) | - | 2033262..2033459 (-) | 198 | WP_002885716.1 | helix-turn-helix transcriptional regulator | - |
| DQM60_RS09550 (NCTC7366_01934) | - | 2033710..2034903 (-) | 1194 | WP_003095894.1 | acetate kinase | - |
| DQM60_RS09555 (NCTC7366_01935) | comYH | 2034960..2035916 (-) | 957 | WP_037601477.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DQM60_RS09560 (NCTC7366_01936) | comGG | 2035961..2036278 (-) | 318 | WP_037601475.1 | competence type IV pilus minor pilin ComGG | - |
| DQM60_RS09565 (NCTC7366_01937) | comYF | 2036256..2036693 (-) | 438 | WP_037601472.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DQM60_RS09570 (NCTC7366_01938) | comGE | 2036680..2036910 (-) | 231 | WP_084871057.1 | competence type IV pilus minor pilin ComGE | - |
| DQM60_RS09575 (NCTC7366_01939) | comYD | 2036942..2037370 (-) | 429 | WP_269434102.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DQM60_RS09580 (NCTC7366_01940) | comYC | 2037330..2037644 (-) | 315 | WP_037611125.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQM60_RS09585 (NCTC7366_01941) | comYB | 2037653..2038753 (-) | 1101 | WP_138261574.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DQM60_RS09590 (NCTC7366_01942) | comGA/cglA/cilD | 2038635..2039576 (-) | 942 | WP_002887018.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQM60_RS09595 (NCTC7366_01943) | - | 2039610..2041088 (-) | 1479 | WP_084871058.1 | IS1182 family transposase | - |
| DQM60_RS09600 (NCTC7366_01944) | - | 2041218..2041580 (-) | 363 | WP_049529260.1 | DUF1033 family protein | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11428.31 Da Isoelectric Point: 9.7150
>NTDB_id=1138805 DQM60_RS09580 WP_037611125.1 2037330..2037644(-) (comYC) [Streptococcus salivarius strain NCTC7366]
MKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
MKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=1138805 DQM60_RS09580 WP_037611125.1 2037330..2037644(-) (comYC) [Streptococcus salivarius strain NCTC7366]
TTGAAAAAATTGAATGCCGTTAAACTACGAGCTTTTACACTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAATAAGACAGCTAGCTTAGCTGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTATTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
TTGAAAAAATTGAATGCCGTTAAACTACGAGCTTTTACACTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAATAAGACAGCTAGCTTAGCTGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTATTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus mutans UA140 |
70.192 |
100 |
0.702 |
| comYC | Streptococcus mutans UA159 |
70.192 |
100 |
0.702 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
64.762 |
100 |
0.654 |
| comGC/cglC | Streptococcus mitis SK321 |
63.636 |
95.192 |
0.606 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
59.406 |
97.115 |
0.577 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
58.416 |
97.115 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae R6 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae D39 |
59.596 |
95.192 |
0.567 |
| comYC | Streptococcus suis isolate S10 |
61.364 |
84.615 |
0.519 |
| comGC | Staphylococcus aureus MW2 |
50 |
75 |
0.375 |
| comGC | Staphylococcus aureus N315 |
50 |
75 |
0.375 |