Detailed information NTG1138804

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: DQM60_RS09575
• Genome accession: NZ_LS483366
• Coordinates: 2036942..2037370 (-)
• Length: 142 a.a.
• NCBI ID: WP_269434102.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain NCTC7366
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2031942..2042370

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM60_RS09535 (NCTC7366_01931)	-	2032070..2032516 (-)	447	WP_013991259.1	hypothetical protein	-
DQM60_RS09540 (NCTC7366_01932)	-	2032594..2033250 (-)	657	WP_037601483.1	CPBP family intramembrane glutamic endopeptidase	-
DQM60_RS09545 (NCTC7366_01933)	-	2033262..2033459 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
DQM60_RS09550 (NCTC7366_01934)	-	2033710..2034903 (-)	1194	WP_003095894.1	acetate kinase	-
DQM60_RS09555 (NCTC7366_01935)	comYH	2034960..2035916 (-)	957	WP_037601477.1	class I SAM-dependent methyltransferase	Machinery gene
DQM60_RS09560 (NCTC7366_01936)	comGG	2035961..2036278 (-)	318	WP_037601475.1	competence type IV pilus minor pilin ComGG	-
DQM60_RS09565 (NCTC7366_01937)	comYF	2036256..2036693 (-)	438	WP_037601472.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQM60_RS09570 (NCTC7366_01938)	comGE	2036680..2036910 (-)	231	WP_084871057.1	competence type IV pilus minor pilin ComGE	-
DQM60_RS09575 (NCTC7366_01939)	comYD	2036942..2037370 (-)	429	WP_269434102.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQM60_RS09580 (NCTC7366_01940)	comYC	2037330..2037644 (-)	315	WP_037611125.1	competence type IV pilus major pilin ComGC	Machinery gene
DQM60_RS09585 (NCTC7366_01941)	comYB	2037653..2038753 (-)	1101	WP_138261574.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQM60_RS09590 (NCTC7366_01942)	comGA/cglA/cilD	2038635..2039576 (-)	942	WP_002887018.1	competence type IV pilus ATPase ComGA	Machinery gene
DQM60_RS09595 (NCTC7366_01943)	-	2039610..2041088 (-)	1479	WP_084871058.1	IS1182 family transposase	-
DQM60_RS09600 (NCTC7366_01944)	-	2041218..2041580 (-)	363	WP_049529260.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15757.21 Da
• Isoelectric Point: 10.3019

>NTDB_id=1138804 DQM60_RS09575 WP_269434102.1 2036942..2037370(-) (comYD) [Streptococcus salivarius strain NCTC7366]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAVAEGSNVELQLSKD
KISNGKSSLVIPKNIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=1138804 DQM60_RS09575 WP_269434102.1 2036942..2037370(-) (comYD) [Streptococcus salivarius strain NCTC7366]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTTACCTTGTTGGAGAGTCTGGTGACTCTAGCAGT
GGTTGCCTTTCTCACTCTGAGTTTATCAGGCTCAGTCACAGGTATTTTTCAGCAGGTTGAGACTAATCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGTGGCGGAAGGGTCCAATGTTGAATTGCAGTTGTCCAAGGAT
AAAATCAGTAACGGAAAATCCAGTCTGGTGATTCCTAAAAATATACATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
CAAAGGAGGCAACTCTAGCCTCACAAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	55.725	92.254	0.514
comYD	Streptococcus mutans UA159	55.725	92.254	0.514
comYD	Streptococcus gordonii str. Challis substr. CH1	43.571	98.592	0.43
comGD/cglD	Streptococcus pneumoniae Rx1	46.457	89.437	0.415
comGD/cglD	Streptococcus pneumoniae D39	46.457	89.437	0.415
comGD/cglD	Streptococcus pneumoniae R6	46.457	89.437	0.415
comGD/cglD	Streptococcus mitis NCTC 12261	46.457	89.437	0.415
comGD/cglD	Streptococcus pneumoniae TIGR4	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis SK321	45.669	89.437	0.408
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38