Detailed information NTG1137573

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: DQL21_RS01600
• Genome accession: NZ_LS483343
• Coordinates: 295453..295767 (+)
• Length: 104 a.a.
• NCBI ID: WP_018031094.1
• Uniprot ID: -
• Organism: Streptococcus ferus strain NCTC12278
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 290453..300767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL21_RS01575 (NCTC12278_00301)	-	290748..291344 (+)	597	WP_018031089.1	PepSY domain-containing protein	-
DQL21_RS01580 (NCTC12278_00302)	-	291488..292180 (+)	693	WP_018031090.1	response regulator transcription factor	-
DQL21_RS01585 (NCTC12278_00303)	-	292143..293492 (+)	1350	WP_018031091.1	cell wall metabolism sensor histidine kinase WalK	-
DQL21_RS01590 (NCTC12278_00304)	comYA	293545..294486 (+)	942	WP_018031092.1	competence type IV pilus ATPase ComGA	Machinery gene
DQL21_RS01595 (NCTC12278_00305)	comYB	294383..295456 (+)	1074	WP_269458426.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQL21_RS01600 (NCTC12278_00306)	comYC	295453..295767 (+)	315	WP_018031094.1	competence type IV pilus major pilin ComGC	Machinery gene
DQL21_RS01605 (NCTC12278_00307)	comYD	295754..296167 (+)	414	WP_018031095.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQL21_RS01610 (NCTC12278_00308)	comGE	296157..296432 (+)	276	WP_018031096.1	competence type IV pilus minor pilin ComGE	-
DQL21_RS01615 (NCTC12278_00309)	comYF	296398..296853 (+)	456	WP_040804182.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQL21_RS01620 (NCTC12278_00310)	comGG	296831..297226 (+)	396	WP_018031098.1	competence type IV pilus minor pilin ComGG	-
DQL21_RS01625 (NCTC12278_00311)	comYH	297276..298232 (+)	957	WP_018031099.1	class I SAM-dependent methyltransferase	Machinery gene
DQL21_RS01630 (NCTC12278_00312)	-	298290..299483 (+)	1194	WP_018031100.1	acetate kinase	-
DQL21_RS01635 (NCTC12278_00313)	-	299619..299816 (+)	198	WP_018031101.1	helix-turn-helix transcriptional regulator	-
DQL21_RS01640 (NCTC12278_00314)	-	299877..300326 (+)	450	WP_018031102.1	hypothetical protein	-

Sequence

Protein

• Length: 104 a.a.
• Molecular weight: 11506.41 Da
• Isoelectric Point: 9.3500

>NTDB_id=1137573 DQL21_RS01600 WP_018031094.1 295453..295767(+) (comYC) [Streptococcus ferus strain NCTC12278]
MKLLKTARLKAFTLIEMLVVLLIISVLLLLFVPNLTQQKDKVKDTGAAAVVKVVESQAELYELDNSGSASLSKLVASGDI
SKDQAESYRDYYAKHKDKQQHVAN

Nucleotide

• Length: 315 bp

>NTDB_id=1137573 DQL21_RS01600 WP_018031094.1 295453..295767(+) (comYC) [Streptococcus ferus strain NCTC12278]
ATGAAATTACTCAAAACCGCTAGGTTAAAAGCATTCACCCTAATCGAAATGTTGGTTGTCTTATTAATTATCAGTGTTCT
ATTACTGCTTTTTGTGCCTAATTTAACCCAACAAAAGGATAAGGTCAAGGATACTGGGGCAGCTGCTGTCGTCAAGGTTG
TTGAGAGTCAGGCAGAGCTGTATGAACTGGACAACAGCGGATCGGCCAGCCTTTCTAAATTAGTAGCTTCTGGGGATATC
AGTAAGGACCAAGCGGAATCTTATCGTGACTATTACGCTAAACACAAGGATAAACAGCAACATGTGGCGAATTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (10-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus mutans UA140	75.962	100	0.76
comYC	Streptococcus mutans UA159	75.962	100	0.76
comYC	Streptococcus gordonii str. Challis substr. CH1	70.476	100	0.712
comGC/cglC	Streptococcus mitis NCTC 12261	67.677	95.192	0.644
comGC/cglC	Streptococcus mitis SK321	70.526	91.346	0.644
comGC/cglC	Streptococcus pneumoniae TIGR4	61.765	98.077	0.606
comGC/cglC	Streptococcus pneumoniae D39	65.263	91.346	0.596
comGC/cglC	Streptococcus pneumoniae Rx1	65.263	91.346	0.596
comGC/cglC	Streptococcus pneumoniae R6	65.263	91.346	0.596
comGC	Lactococcus lactis subsp. cremoris KW2	56.842	91.346	0.519
comYC	Streptococcus suis isolate S10	60.227	84.615	0.51
comGC	Staphylococcus aureus MW2	48.235	81.731	0.394
comGC	Staphylococcus aureus N315	48.235	81.731	0.394