Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | DQL21_RS01625 | Genome accession | NZ_LS483343 |
| Coordinates | 297276..298232 (+) | Length | 318 a.a. |
| NCBI ID | WP_018031099.1 | Uniprot ID | A0A2X3W185 |
| Organism | Streptococcus ferus strain NCTC12278 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 292276..303232
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL21_RS01590 (NCTC12278_00304) | comYA | 293545..294486 (+) | 942 | WP_018031092.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQL21_RS01595 (NCTC12278_00305) | comYB | 294383..295456 (+) | 1074 | WP_269458426.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DQL21_RS01600 (NCTC12278_00306) | comYC | 295453..295767 (+) | 315 | WP_018031094.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQL21_RS01605 (NCTC12278_00307) | comYD | 295754..296167 (+) | 414 | WP_018031095.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DQL21_RS01610 (NCTC12278_00308) | comGE | 296157..296432 (+) | 276 | WP_018031096.1 | competence type IV pilus minor pilin ComGE | - |
| DQL21_RS01615 (NCTC12278_00309) | comYF | 296398..296853 (+) | 456 | WP_040804182.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DQL21_RS01620 (NCTC12278_00310) | comGG | 296831..297226 (+) | 396 | WP_018031098.1 | competence type IV pilus minor pilin ComGG | - |
| DQL21_RS01625 (NCTC12278_00311) | comYH | 297276..298232 (+) | 957 | WP_018031099.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DQL21_RS01630 (NCTC12278_00312) | - | 298290..299483 (+) | 1194 | WP_018031100.1 | acetate kinase | - |
| DQL21_RS01635 (NCTC12278_00313) | - | 299619..299816 (+) | 198 | WP_018031101.1 | helix-turn-helix transcriptional regulator | - |
| DQL21_RS01640 (NCTC12278_00314) | - | 299877..300326 (+) | 450 | WP_018031102.1 | hypothetical protein | - |
| DQL21_RS01645 (NCTC12278_00315) | - | 300336..301169 (+) | 834 | WP_018031103.1 | ABC transporter ATP-binding protein | - |
| DQL21_RS01650 (NCTC12278_00316) | - | 301162..301866 (+) | 705 | WP_018031104.1 | hypothetical protein | - |
| DQL21_RS01655 (NCTC12278_00317) | - | 301917..302585 (+) | 669 | WP_018031105.1 | CPBP family intramembrane glutamic endopeptidase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 36038.02 Da Isoelectric Point: 4.5847
>NTDB_id=1137576 DQL21_RS01625 WP_018031099.1 297276..298232(+) (comYH) [Streptococcus ferus strain NCTC12278]
MNFEKIEQAYQLLLENTQLIESKLDISIYEALIEQNAYYLGEASDEATIMANNGRLRELGLTAEEWRRSFQFLFLKASQE
QPLQANHQFTPDSIGFIILYLLEELTPQLSSFDLLEIGSGTGNLAETLVINSRKKIDYLGIEADDLLIDLSASIADVIGS
DIRFVQEDAVRPQILKESDVIVSDLPIGYYPHDHLAKRYQVGAKTGHTYAHHLLMEQALKYLKQDGIAIFLAPSNLLTSE
QSALLKDWLRHHASLLAVVALPEAFFGSQQYVKSLFVLQKQRQQPVETFVYPLSDLQNPDAITAFMKNFQNWKQESAI
MNFEKIEQAYQLLLENTQLIESKLDISIYEALIEQNAYYLGEASDEATIMANNGRLRELGLTAEEWRRSFQFLFLKASQE
QPLQANHQFTPDSIGFIILYLLEELTPQLSSFDLLEIGSGTGNLAETLVINSRKKIDYLGIEADDLLIDLSASIADVIGS
DIRFVQEDAVRPQILKESDVIVSDLPIGYYPHDHLAKRYQVGAKTGHTYAHHLLMEQALKYLKQDGIAIFLAPSNLLTSE
QSALLKDWLRHHASLLAVVALPEAFFGSQQYVKSLFVLQKQRQQPVETFVYPLSDLQNPDAITAFMKNFQNWKQESAI
Nucleotide
Download Length: 957 bp
>NTDB_id=1137576 DQL21_RS01625 WP_018031099.1 297276..298232(+) (comYH) [Streptococcus ferus strain NCTC12278]
ATGAATTTTGAAAAGATTGAACAGGCCTATCAGCTGCTCTTGGAAAATACGCAGCTGATTGAAAGCAAGTTAGACATTTC
TATTTATGAAGCCTTGATAGAACAAAATGCTTATTATTTAGGAGAAGCCAGTGATGAAGCCACGATTATGGCGAATAACG
GTCGTCTCAGAGAGCTTGGACTGACAGCAGAAGAGTGGCGCCGCAGTTTTCAGTTCCTTTTCCTCAAAGCTTCTCAGGAG
CAGCCTCTGCAGGCCAACCATCAGTTTACTCCTGACAGTATTGGCTTTATTATCCTTTACCTCTTAGAAGAGCTGACACC
CCAGTTGTCAAGCTTTGATCTTTTGGAAATCGGTTCAGGAACAGGTAATTTAGCAGAGACCTTAGTGATCAACAGTCGCA
AGAAAATTGACTACCTAGGGATTGAAGCAGATGATCTGCTGATTGACTTGTCAGCCAGCATTGCTGATGTGATTGGTTCT
GATATTCGTTTTGTTCAGGAAGATGCGGTCAGACCACAGATTCTGAAAGAAAGTGATGTGATTGTCAGTGATCTGCCGAT
TGGCTATTATCCTCATGATCATCTGGCTAAGCGCTATCAGGTGGGGGCTAAAACGGGTCATACCTACGCCCATCATCTGT
TGATGGAGCAGGCCTTGAAATACCTCAAACAAGATGGCATTGCTATTTTTTTGGCTCCCAGCAATCTGTTGACCAGTGAG
CAGAGTGCCTTGCTAAAGGATTGGCTGAGACATCATGCCTCCCTCTTGGCCGTTGTCGCTTTGCCAGAAGCCTTTTTTGG
CAGTCAGCAGTATGTCAAGTCCCTTTTCGTCTTGCAAAAACAACGTCAGCAGCCAGTTGAGACCTTTGTTTACCCGCTTT
CCGATTTACAAAATCCAGATGCCATTACAGCCTTCATGAAAAATTTTCAAAACTGGAAACAGGAGAGTGCCATTTGA
ATGAATTTTGAAAAGATTGAACAGGCCTATCAGCTGCTCTTGGAAAATACGCAGCTGATTGAAAGCAAGTTAGACATTTC
TATTTATGAAGCCTTGATAGAACAAAATGCTTATTATTTAGGAGAAGCCAGTGATGAAGCCACGATTATGGCGAATAACG
GTCGTCTCAGAGAGCTTGGACTGACAGCAGAAGAGTGGCGCCGCAGTTTTCAGTTCCTTTTCCTCAAAGCTTCTCAGGAG
CAGCCTCTGCAGGCCAACCATCAGTTTACTCCTGACAGTATTGGCTTTATTATCCTTTACCTCTTAGAAGAGCTGACACC
CCAGTTGTCAAGCTTTGATCTTTTGGAAATCGGTTCAGGAACAGGTAATTTAGCAGAGACCTTAGTGATCAACAGTCGCA
AGAAAATTGACTACCTAGGGATTGAAGCAGATGATCTGCTGATTGACTTGTCAGCCAGCATTGCTGATGTGATTGGTTCT
GATATTCGTTTTGTTCAGGAAGATGCGGTCAGACCACAGATTCTGAAAGAAAGTGATGTGATTGTCAGTGATCTGCCGAT
TGGCTATTATCCTCATGATCATCTGGCTAAGCGCTATCAGGTGGGGGCTAAAACGGGTCATACCTACGCCCATCATCTGT
TGATGGAGCAGGCCTTGAAATACCTCAAACAAGATGGCATTGCTATTTTTTTGGCTCCCAGCAATCTGTTGACCAGTGAG
CAGAGTGCCTTGCTAAAGGATTGGCTGAGACATCATGCCTCCCTCTTGGCCGTTGTCGCTTTGCCAGAAGCCTTTTTTGG
CAGTCAGCAGTATGTCAAGTCCCTTTTCGTCTTGCAAAAACAACGTCAGCAGCCAGTTGAGACCTTTGTTTACCCGCTTT
CCGATTTACAAAATCCAGATGCCATTACAGCCTTCATGAAAAATTTTCAAAACTGGAAACAGGAGAGTGCCATTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
66.562 |
99.686 |
0.664 |
| comYH | Streptococcus mutans UA159 |
66.246 |
99.686 |
0.66 |