Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQL47_RS09065 Genome accession   NZ_LS483328
Coordinates   1884348..1884827 (-) Length   159 a.a.
NCBI ID   WP_111690409.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1879348..1889827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS09035 (NCTC12090_01828) - 1879778..1880338 (-) 561 WP_012516308.1 TIGR01440 family protein -
  DQL47_RS09040 (NCTC12090_01829) - 1880351..1880824 (-) 474 WP_012516309.1 ECF transporter S component -
  DQL47_RS09045 (NCTC12090_01830) - 1880830..1881579 (-) 750 WP_111690421.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DQL47_RS09050 (NCTC12090_01831) truA 1881569..1882318 (-) 750 WP_012680115.1 tRNA pseudouridine(38-40) synthase TruA -
  DQL47_RS09060 (NCTC12090_01832) - 1882505..1883869 (+) 1365 WP_043031437.1 aspartate kinase -
  DQL47_RS09065 (NCTC12090_01833) comX/sigX/comX2/sigX2 1884348..1884827 (-) 480 WP_111690409.1 competence protein ComX Regulator

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19114.10 Da        Isoelectric Point: 7.3117

>NTDB_id=1136768 DQL47_RS09065 WP_111690409.1 1884348..1884827(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MSDDLVRLFDKIKPIIMKLRRHYYIQLWELDDWLQEGRLILYRLLVTYPELIEDEEKLYRYFKTKFSSYLKDVLRQQESQ
KRRFHKMAYEEIGAVGHAIPAGGLGVDDYVAYQLIVKEVEEQLTESELLQFRALIRGERFEGRRALLRKIGPYFQDFTG

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1136768 DQL47_RS09065 WP_111690409.1 1884348..1884827(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
ATGAGTGATGATTTAGTGAGGTTGTTTGATAAGATCAAGCCTATTATTATGAAGCTAAGACGGCATTATTATATTCAGCT
GTGGGAGCTAGATGATTGGTTACAGGAGGGGCGGTTGATCTTGTATCGGTTATTGGTCACTTATCCAGAATTGATAGAGG
ATGAGGAGAAGCTGTACCGTTATTTTAAGACCAAGTTTTCCTCTTATTTGAAGGACGTGTTGCGGCAGCAGGAGAGTCAG
AAGCGTCGGTTTCATAAGATGGCTTATGAGGAGATTGGGGCGGTAGGGCATGCGATACCAGCAGGTGGCTTGGGAGTAGA
TGATTATGTGGCTTATCAGTTGATTGTGAAGGAGGTTGAGGAGCAATTGACAGAGAGCGAGCTGTTACAGTTTAGGGCTT
TGATCAGGGGAGAGCGGTTTGAGGGGAGACGGGCCTTGCTTCGCAAGATAGGACCTTACTTTCAGGACTTTACTGGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

69.62

99.371

0.692
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

69.62

99.371

0.692
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

69.62

99.371

0.692
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

69.62

99.371

0.692
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

69.62

99.371

0.692
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

69.62

99.371

0.692
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

48.387

97.484

0.472
  comX/sigX Streptococcus mutans UA159

46.497

98.742

0.459
  comX Streptococcus sobrinus strain NIDR 6715-7

45.752

96.226

0.44
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

40.667

94.34

0.384
  comX Streptococcus thermophilus LMD-9

39.216

96.226

0.377
  comX Streptococcus thermophilus LMG 18311

39.216

96.226

0.377
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

39.735

94.969

0.377
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

39.735

94.969

0.377
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

39.333

94.34

0.371
  comX/comX2 Streptococcus pneumoniae Rx1

38.411

94.969

0.365
  comX/comX1 Streptococcus pneumoniae Rx1

38.411

94.969

0.365
  comX/comX2 Streptococcus pneumoniae D39

38.411

94.969

0.365
  comX/comX2 Streptococcus pneumoniae R6

38.411

94.969

0.365
  comX/comX1 Streptococcus pneumoniae R6

38.411

94.969

0.365
  comX/comX1 Streptococcus pneumoniae D39

38.411

94.969

0.365
  comX/comX2 Streptococcus pneumoniae TIGR4

38.411

94.969

0.365
  comX/comX1 Streptococcus pneumoniae TIGR4

38.411

94.969

0.365
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

38.667

94.34

0.365

Multiple sequence alignment