Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQL35_RS09340 Genome accession   NZ_LS483325
Coordinates   1930781..1931260 (-) Length   159 a.a.
NCBI ID   WP_111678583.1    Uniprot ID   A0AAX2LIP2
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC7022     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1925781..1936260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL35_RS09315 (NCTC7022_01882) - 1926245..1926805 (-) 561 WP_111678575.1 TIGR01440 family protein -
  DQL35_RS09320 (NCTC7022_01883) - 1926818..1927291 (-) 474 WP_111678864.1 ECF transporter S component -
  DQL35_RS09325 (NCTC7022_01884) - 1927297..1928046 (-) 750 WP_111678577.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DQL35_RS09330 (NCTC7022_01885) truA 1928036..1928785 (-) 750 WP_111678579.1 tRNA pseudouridine(38-40) synthase TruA -
  DQL35_RS09335 (NCTC7022_01886) - 1928972..1930336 (+) 1365 WP_111678581.1 aspartate kinase -
  DQL35_RS09340 (NCTC7022_01887) comX/sigX/comX2/sigX2 1930781..1931260 (-) 480 WP_111678583.1 competence protein ComX Regulator
  DQL35_RS09350 (NCTC7022_01889) - 1931632..1932888 (+) 1257 WP_111678585.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19116.07 Da        Isoelectric Point: 8.2737

>NTDB_id=1136597 DQL35_RS09340 WP_111678583.1 1930781..1931260(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
MTDDLVRLFDKIKPIIMKLRRHYYIQLWELDDWLQEGRLILYRLLVTYPELIEDEEKLYRYFKTKFSSYLKDVLRQQESQ
KRRFHKMAYEEIGSVGHAIPAGGLGVDDYVAYQLIVKEVEERLTEGELSQFRALIRGERFEGRRALLRKIGPYFQDFTG

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1136597 DQL35_RS09340 WP_111678583.1 1930781..1931260(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
ATGACTGATGATTTAGTGAGGTTGTTTGATAAGATCAAGCCTATTATTATGAAGCTAAGACGGCATTATTATATTCAGCT
GTGGGAGCTAGATGATTGGTTACAGGAGGGACGGTTGATCTTGTATCGGTTGTTGGTTACTTATCCAGAATTGATAGAGG
ATGAGGAGAAGCTGTATCGTTATTTTAAGACCAAGTTTTCCTCTTATTTGAAGGACGTGTTGCGGCAGCAGGAGAGTCAG
AAGCGTCGGTTTCATAAGATGGCTTATGAGGAGATTGGGTCGGTAGGCCATGCGATACCAGCAGGTGGCTTGGGAGTAGA
TGATTATGTGGCTTATCAGTTGATTGTGAAGGAGGTTGAGGAGCGATTGACAGAGGGTGAGCTGTCGCAGTTTCGGGCTT
TGATCAGGGGAGAGCGGTTTGAGGGGAGACGGGCCTTGCTTCGCAAGATAGGACCTTACTTTCAGGATTTTACTGGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

68.354

99.371

0.679
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

68.354

99.371

0.679
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

68.354

99.371

0.679
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

68.354

99.371

0.679
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

68.354

99.371

0.679
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

68.354

99.371

0.679
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

47.742

97.484

0.465
  comX/sigX Streptococcus mutans UA159

46.497

98.742

0.459
  comX Streptococcus sobrinus strain NIDR 6715-7

45.752

96.226

0.44
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

40.667

94.34

0.384
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

40.397

94.969

0.384
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

40.397

94.969

0.384
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

39.333

94.34

0.371
  comX/comX2 Streptococcus pneumoniae TIGR4

38.411

94.969

0.365
  comX/comX1 Streptococcus pneumoniae TIGR4

38.411

94.969

0.365
  comX/comX2 Streptococcus pneumoniae Rx1

38.411

94.969

0.365
  comX/comX1 Streptococcus pneumoniae Rx1

38.411

94.969

0.365
  comX/comX2 Streptococcus pneumoniae D39

38.411

94.969

0.365
  comX/comX1 Streptococcus pneumoniae D39

38.411

94.969

0.365
  comX/comX2 Streptococcus pneumoniae R6

38.411

94.969

0.365
  comX/comX1 Streptococcus pneumoniae R6

38.411

94.969

0.365
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

38.667

94.34

0.365
  comX Streptococcus thermophilus LMG 18311

37.908

96.226

0.365
  comX Streptococcus thermophilus LMD-9

37.908

96.226

0.365

Multiple sequence alignment