Detailed information NTG1130993

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: H0511_RS08720
• Genome accession: NZ_LR822017
• Coordinates: 1707508..1707834 (-)
• Length: 108 a.a.
• NCBI ID: WP_179972346.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_336
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1702508..1712834

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0511_RS10230 (STHERMO_1963)	-	1702773..1703198 (-)	426	WP_014608739.1	CPBP family intramembrane glutamic endopeptidase	-
H0511_RS10235 (STHERMO_1964)	-	1703155..1703430 (-)	276	WP_011681681.1	hypothetical protein	-
H0511_RS08685	-	1703442..1703640 (-)	199	Protein_1681	helix-turn-helix transcriptional regulator	-
H0511_RS08690 (STHERMO_1966)	-	1703889..1705082 (-)	1194	WP_014608740.1	acetate kinase	-
H0511_RS08695 (STHERMO_1967)	comYH	1705138..1706094 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
H0511_RS08700 (STHERMO_1968)	comGG	1706139..1706456 (-)	318	WP_011681685.1	competence type IV pilus minor pilin ComGG	-
H0511_RS08705 (STHERMO_1969)	comYF	1706434..1706871 (-)	438	WP_179974042.1	competence type IV pilus minor pilin ComGF	Machinery gene
H0511_RS08710 (STHERMO_1970)	comGE	1706855..1707148 (-)	294	WP_179972344.1	competence type IV pilus minor pilin ComGE	-
H0511_RS08715 (STHERMO_1971)	comGD	1707120..1707548 (-)	429	WP_269473123.1	competence type IV pilus minor pilin ComGD	-
H0511_RS08720 (STHERMO_1972)	comYC	1707508..1707834 (-)	327	WP_179972346.1	competence type IV pilus major pilin ComGC	Machinery gene
H0511_RS08725 (STHERMO_1973)	comYB	1707831..1708931 (-)	1101	WP_179974043.1	competence type IV pilus assembly protein ComGB	Machinery gene
H0511_RS08730 (STHERMO_1974)	comGA/cglA/cilD	1708813..1709754 (-)	942	WP_179974044.1	competence type IV pilus ATPase ComGA	Machinery gene
H0511_RS08735 (STHERMO_1975)	-	1709835..1710197 (-)	363	WP_179972348.1	DUF1033 family protein	-

Sequence

Protein

• Length: 108 a.a.
• Molecular weight: 11944.02 Da
• Isoelectric Point: 9.9219

>NTDB_id=1130993 H0511_RS08720 WP_179972346.1 1707508..1707834(-) (comYC) [Streptococcus thermophilus isolate STH_CIRM_336]
MKLMLKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVS
EGQITQKQADSYNDYYAKHGSESRSVAN

Nucleotide

• Length: 327 bp

>NTDB_id=1130993 H0511_RS08720 WP_179972346.1 1707508..1707834(-) (comYC) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGAAATTGATGTTAAAAAAATTGAATGCCGTTAAATTACGAGCCTTTACTCTGATTGAAATGCTAGTCGTACTTCTCAT
TATCAGTATTCTCCTTTTGCTCTTTGTTCCTAACTTAAGCAAGCAGAAGGATTCCGTTAAGGAAACTGGAAATGCGGCTG
TAGTCAAGGTCGTGGATTCTCAGGCAGAACTTTATGAAATGAAGAATAACAAGACAGCTAGCTTGGCAGCTCTTGTTTCA
GAAGGTCAAATTACGCAAAAACAGGCAGATTCATACAATGATTACTATGCGAAACATGGTAGTGAAAGCCGCTCAGTGGC
CAATTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (14-34)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus mutans UA140	70.192	96.296	0.676
comYC	Streptococcus mutans UA159	70.192	96.296	0.676
comYC	Streptococcus gordonii str. Challis substr. CH1	64.762	97.222	0.63
comGC/cglC	Streptococcus mitis SK321	61.321	98.148	0.602
comGC/cglC	Streptococcus mitis NCTC 12261	58.333	100	0.583
comGC/cglC	Streptococcus pneumoniae D39	57.547	98.148	0.565
comGC/cglC	Streptococcus pneumoniae R6	57.547	98.148	0.565
comGC/cglC	Streptococcus pneumoniae Rx1	57.547	98.148	0.565
comGC/cglC	Streptococcus pneumoniae TIGR4	57.547	98.148	0.565
comGC	Lactococcus lactis subsp. cremoris KW2	56.604	98.148	0.556
comYC	Streptococcus suis isolate S10	60.227	81.481	0.491
comGC	Staphylococcus aureus MW2	50	72.222	0.361
comGC	Staphylococcus aureus N315	50	72.222	0.361