Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H0511_RS08695 Genome accession   NZ_LR822017
Coordinates   1705138..1706094 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1700138..1711094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS08665 (STHERMO_1960) proC 1700697..1701467 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  H0511_RS08670 (STHERMO_1961) - 1701497..1702159 (-) 663 WP_179974041.1 CPBP family intramembrane glutamic endopeptidase -
  H0511_RS08675 (STHERMO_1962) - 1702256..1702699 (-) 444 WP_011681680.1 hypothetical protein -
  H0511_RS10230 (STHERMO_1963) - 1702773..1703198 (-) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  H0511_RS10235 (STHERMO_1964) - 1703155..1703430 (-) 276 WP_011681681.1 hypothetical protein -
  H0511_RS08685 - 1703442..1703640 (-) 199 Protein_1681 helix-turn-helix transcriptional regulator -
  H0511_RS08690 (STHERMO_1966) - 1703889..1705082 (-) 1194 WP_014608740.1 acetate kinase -
  H0511_RS08695 (STHERMO_1967) comYH 1705138..1706094 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  H0511_RS08700 (STHERMO_1968) comGG 1706139..1706456 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  H0511_RS08705 (STHERMO_1969) comYF 1706434..1706871 (-) 438 WP_179974042.1 competence type IV pilus minor pilin ComGF Machinery gene
  H0511_RS08710 (STHERMO_1970) comGE 1706855..1707148 (-) 294 WP_179972344.1 competence type IV pilus minor pilin ComGE -
  H0511_RS08715 (STHERMO_1971) comGD 1707120..1707548 (-) 429 WP_269473123.1 competence type IV pilus minor pilin ComGD -
  H0511_RS08720 (STHERMO_1972) comYC 1707508..1707834 (-) 327 WP_179972346.1 competence type IV pilus major pilin ComGC Machinery gene
  H0511_RS08725 (STHERMO_1973) comYB 1707831..1708931 (-) 1101 WP_179974043.1 competence type IV pilus assembly protein ComGB Machinery gene
  H0511_RS08730 (STHERMO_1974) comGA/cglA/cilD 1708813..1709754 (-) 942 WP_179974044.1 competence type IV pilus ATPase ComGA Machinery gene
  H0511_RS08735 (STHERMO_1975) - 1709835..1710197 (-) 363 WP_179972348.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=1130991 H0511_RS08695 WP_011226622.1 1705138..1706094(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_336]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1130991 H0511_RS08695 WP_011226622.1 1705138..1706094(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment