Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   GPW68_RS00805 Genome accession   NZ_LR738723
Coordinates   123410..123691 (+) Length   93 a.a.
NCBI ID   WP_074389246.1    Uniprot ID   A0AAP6A9D0
Organism   Streptococcus suis isolate GD-0088     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 118410..128691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW68_RS00785 - 120073..120438 (+) 366 WP_023369079.1 DUF1033 family protein -
  GPW68_RS00790 - 120473..121423 (-) 951 Protein_118 S66 family peptidase -
  GPW68_RS00795 comYA 121509..122459 (+) 951 WP_044760311.1 competence type IV pilus ATPase ComGA Machinery gene
  GPW68_RS00800 comYB 122371..123408 (+) 1038 WP_257116212.1 competence type IV pilus assembly protein ComGB Machinery gene
  GPW68_RS00805 comYC 123410..123691 (+) 282 WP_074389246.1 competence type IV pilus major pilin ComGC Machinery gene
  GPW68_RS00810 comGD 123672..124079 (+) 408 WP_074389247.1 competence type IV pilus minor pilin ComGD -
  GPW68_RS00815 comYE 124051..124344 (+) 294 WP_024413203.1 competence type IV pilus minor pilin ComGE Machinery gene
  GPW68_RS00820 comGF/cglF 124331..124765 (+) 435 WP_074389248.1 competence type IV pilus minor pilin ComGF Machinery gene
  GPW68_RS00825 comGG 124743..125153 (+) 411 WP_074389249.1 competence type IV pilus minor pilin ComGG -
  GPW68_RS00830 - 125634..126059 (-) 426 WP_226319165.1 ArpU family phage packaging/lysis transcriptional regulator -
  GPW68_RS00835 - 126383..126958 (-) 576 WP_074392204.1 hypothetical protein -
  GPW68_RS11485 - 126979..127152 (-) 174 WP_171840772.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10283.21 Da        Isoelectric Point: 7.0128

>NTDB_id=1129530 GPW68_RS00805 WP_074389246.1 123410..123691(+) (comYC) [Streptococcus suis isolate GD-0088]
MKKLVEMKVKGFTLVEMLVVLGIISLLLLLFVPNLSKQKEAIKESGGTAVVKVVESQMELYALEHDKEATVADLQSAGYI
TEKQAEEYAKAKK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=1129530 GPW68_RS00805 WP_074389246.1 123410..123691(+) (comYC) [Streptococcus suis isolate GD-0088]
ATGAAAAAATTAGTTGAAATGAAGGTAAAAGGGTTCACTCTGGTGGAAATGCTAGTCGTTTTGGGGATCATTAGCCTGCT
CTTGCTCCTTTTTGTGCCAAATTTGAGCAAACAAAAAGAAGCGATTAAAGAGTCCGGGGGTACAGCTGTCGTCAAAGTCG
TGGAAAGCCAGATGGAACTTTATGCATTAGAACATGATAAGGAAGCTACGGTGGCAGACTTGCAGTCGGCTGGCTATATT
ACTGAGAAACAAGCAGAAGAGTATGCTAAGGCGAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus suis isolate S10

84.946

100

0.849
  comYC Streptococcus gordonii str. Challis substr. CH1

61.798

95.699

0.591
  comGC/cglC Streptococcus mitis SK321

64.706

91.398

0.591
  comGC/cglC Streptococcus mitis NCTC 12261

64.706

91.398

0.591
  comGC/cglC Streptococcus pneumoniae D39

66.667

87.097

0.581
  comGC/cglC Streptococcus pneumoniae R6

66.667

87.097

0.581
  comGC/cglC Streptococcus pneumoniae TIGR4

66.667

87.097

0.581
  comGC/cglC Streptococcus pneumoniae Rx1

66.667

87.097

0.581
  comYC Streptococcus mutans UA140

60.227

94.624

0.57
  comYC Streptococcus mutans UA159

60.227

94.624

0.57
  comGC Lactococcus lactis subsp. cremoris KW2

55.682

94.624

0.527
  comGC Staphylococcus aureus MW2

50

83.871

0.419
  comGC Staphylococcus aureus N315

50

83.871

0.419
  comGC Bacillus subtilis subsp. subtilis str. 168

46.667

80.645

0.376

Multiple sequence alignment