Detailed information
Bioinformatically predicted
Overview
| Name | comYA | Type | Machinery gene |
| Locus tag | GPW68_RS00795 | Genome accession | NZ_LR738723 |
| Coordinates | 121509..122459 (+) | Length | 316 a.a. |
| NCBI ID | WP_044760311.1 | Uniprot ID | - |
| Organism | Streptococcus suis isolate GD-0088 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 116509..127459
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPW68_RS00785 | - | 120073..120438 (+) | 366 | WP_023369079.1 | DUF1033 family protein | - |
| GPW68_RS00790 | - | 120473..121423 (-) | 951 | Protein_118 | S66 family peptidase | - |
| GPW68_RS00795 | comYA | 121509..122459 (+) | 951 | WP_044760311.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GPW68_RS00800 | comYB | 122371..123408 (+) | 1038 | WP_257116212.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GPW68_RS00805 | comYC | 123410..123691 (+) | 282 | WP_074389246.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GPW68_RS00810 | comGD | 123672..124079 (+) | 408 | WP_074389247.1 | competence type IV pilus minor pilin ComGD | - |
| GPW68_RS00815 | comYE | 124051..124344 (+) | 294 | WP_024413203.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| GPW68_RS00820 | comGF/cglF | 124331..124765 (+) | 435 | WP_074389248.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| GPW68_RS00825 | comGG | 124743..125153 (+) | 411 | WP_074389249.1 | competence type IV pilus minor pilin ComGG | - |
| GPW68_RS00830 | - | 125634..126059 (-) | 426 | WP_226319165.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| GPW68_RS00835 | - | 126383..126958 (-) | 576 | WP_074392204.1 | hypothetical protein | - |
| GPW68_RS11485 | - | 126979..127152 (-) | 174 | WP_171840772.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 35410.29 Da Isoelectric Point: 5.4744
>NTDB_id=1129528 GPW68_RS00795 WP_044760311.1 121509..122459(+) (comYA) [Streptococcus suis isolate GD-0088]
MIQEKARKMIEEAVADRVSDIYLVPRGECYQVYHRIMDEREFVQDLAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSISGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSADQWNAQIDRLFAAGHISLRQAETEKIALGAPA
MIQEKARKMIEEAVADRVSDIYLVPRGECYQVYHRIMDEREFVQDLAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSISGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSADQWNAQIDRLFAAGHISLRQAETEKIALGAPA
Nucleotide
Download Length: 951 bp
>NTDB_id=1129528 GPW68_RS00795 WP_044760311.1 121509..122459(+) (comYA) [Streptococcus suis isolate GD-0088]
ATGATTCAAGAAAAAGCAAGAAAGATGATTGAAGAGGCGGTGGCAGATAGGGTCAGTGACATCTATCTAGTTCCTCGAGG
TGAGTGTTACCAAGTCTACCATCGTATCATGGACGAGCGGGAATTTGTGCAAGACTTGGCTGAGGAGGAAGTAACAGCCA
TCATCAGCCATTTCAAGTTTTTAGCAGGTTTAAATGTTGGTGAAAAACGCCGTAGCCAGCAGGGTTCCTGTGACTATGAT
TATGGTAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGTGATTATCGTGGCAAGGAAAGTTTGGTTATCCGCTTGCT
CTATGACAATGACAAGGAACTCAAGTTCTGGTTTGAGGCGGCCGAGCGGCTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCGGTCGGCTCTGGTAAGACCACACTTATGTACCATCTTGCCAGGCTGAAATTCCCAGACAAGCAG
ATTTTGACCATCGAGGATCCTGTCGAAATCAAGCAGGAGGACATGCTGCAACTCCAGCTCAATGAAGCCATCGGAGCCAC
CTACGATAATCTGATCAAACTGTCCCTCCGTCATCGACCAGACTTGCTCATCATCGGTGAGATTCGGGATGCGGAAACCG
CTCGAGCAGTCATTCGAGCCAGCCTGACGGGAGCTACCGTTTTCTCAACAGTTCATGCAAGGTCTATTTCGGGTGTCTAT
GCCCGTATGTTGGAATTGGGTGTCAGCCCTGAGGAGTTAAACAATGCCCTTCAAGGTATTGCCTATCAACGTTTAATCGG
GGGAGGAGGTGTGGTAGATTTTGCAAAGGGAAATTACCAAAACCATTCCGCAGACCAGTGGAATGCGCAAATTGATCGGC
TTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCGCGCCAGCGTAA
ATGATTCAAGAAAAAGCAAGAAAGATGATTGAAGAGGCGGTGGCAGATAGGGTCAGTGACATCTATCTAGTTCCTCGAGG
TGAGTGTTACCAAGTCTACCATCGTATCATGGACGAGCGGGAATTTGTGCAAGACTTGGCTGAGGAGGAAGTAACAGCCA
TCATCAGCCATTTCAAGTTTTTAGCAGGTTTAAATGTTGGTGAAAAACGCCGTAGCCAGCAGGGTTCCTGTGACTATGAT
TATGGTAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGTGATTATCGTGGCAAGGAAAGTTTGGTTATCCGCTTGCT
CTATGACAATGACAAGGAACTCAAGTTCTGGTTTGAGGCGGCCGAGCGGCTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCGGTCGGCTCTGGTAAGACCACACTTATGTACCATCTTGCCAGGCTGAAATTCCCAGACAAGCAG
ATTTTGACCATCGAGGATCCTGTCGAAATCAAGCAGGAGGACATGCTGCAACTCCAGCTCAATGAAGCCATCGGAGCCAC
CTACGATAATCTGATCAAACTGTCCCTCCGTCATCGACCAGACTTGCTCATCATCGGTGAGATTCGGGATGCGGAAACCG
CTCGAGCAGTCATTCGAGCCAGCCTGACGGGAGCTACCGTTTTCTCAACAGTTCATGCAAGGTCTATTTCGGGTGTCTAT
GCCCGTATGTTGGAATTGGGTGTCAGCCCTGAGGAGTTAAACAATGCCCTTCAAGGTATTGCCTATCAACGTTTAATCGG
GGGAGGAGGTGTGGTAGATTTTGCAAAGGGAAATTACCAAAACCATTCCGCAGACCAGTGGAATGCGCAAATTGATCGGC
TTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCGCGCCAGCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYA | Streptococcus gordonii str. Challis substr. CH1 |
69.032 |
98.101 |
0.677 |
| comYA | Streptococcus mutans UA159 |
67.846 |
98.418 |
0.668 |
| comYA | Streptococcus mutans UA140 |
67.846 |
98.418 |
0.668 |
| comGA/cglA/cilD | Streptococcus pneumoniae Rx1 |
65.273 |
98.418 |
0.642 |
| comGA/cglA/cilD | Streptococcus mitis NCTC 12261 |
65.273 |
98.418 |
0.642 |
| comGA/cglA/cilD | Streptococcus pneumoniae D39 |
65.273 |
98.418 |
0.642 |
| comGA/cglA/cilD | Streptococcus pneumoniae R6 |
65.273 |
98.418 |
0.642 |
| comGA/cglA/cilD | Streptococcus pneumoniae TIGR4 |
65.273 |
98.418 |
0.642 |
| comGA/cglA | Streptococcus sobrinus strain NIDR 6715-7 |
64.839 |
98.101 |
0.636 |
| comGA | Lactococcus lactis subsp. cremoris KW2 |
53.312 |
100 |
0.535 |
| comGA | Latilactobacillus sakei subsp. sakei 23K |
41.155 |
87.658 |
0.361 |