Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   FGL23_RS09540 Genome accession   NZ_LR594049
Coordinates   1986053..1986370 (-) Length   105 a.a.
NCBI ID   WP_012130940.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1981053..1991370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS09505 (NCTC10231_01901) - 1981627..1982292 (-) 666 WP_061603428.1 CPBP family intramembrane glutamic endopeptidase -
  FGL23_RS09510 (NCTC10231_01902) - 1982340..1983533 (-) 1194 WP_061603429.1 acetate kinase -
  FGL23_RS09515 (NCTC10231_01903) comYH 1983583..1984536 (-) 954 WP_061603430.1 class I SAM-dependent methyltransferase Machinery gene
  FGL23_RS09520 (NCTC10231_01904) comGG 1984567..1984998 (-) 432 WP_231092517.1 competence type IV pilus minor pilin ComGG -
  FGL23_RS09525 (NCTC10231_01905) comGF/cglF 1984979..1985416 (-) 438 WP_061603431.1 competence type IV pilus minor pilin ComGF Machinery gene
  FGL23_RS09530 (NCTC10231_01906) comGE/cglE 1985400..1985693 (-) 294 WP_061597051.1 competence type IV pilus minor pilin ComGE Machinery gene
  FGL23_RS09535 (NCTC10231_01907) comYD 1985665..1986093 (-) 429 WP_081106361.1 competence type IV pilus minor pilin ComGD Machinery gene
  FGL23_RS09540 (NCTC10231_01908) comYC 1986053..1986370 (-) 318 WP_012130940.1 competence type IV pilus major pilin ComGC Machinery gene
  FGL23_RS09545 (NCTC10231_01909) comYB 1986367..1987401 (-) 1035 WP_061603433.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGL23_RS09550 (NCTC10231_01910) comYA 1987334..1988272 (-) 939 WP_061603434.1 competence type IV pilus ATPase ComGA Machinery gene
  FGL23_RS09555 (NCTC10231_01911) - 1988374..1988742 (-) 369 WP_061600994.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11461.38 Da        Isoelectric Point: 9.9223

>NTDB_id=1127999 FGL23_RS09540 WP_012130940.1 1986053..1986370(-) (comYC) [Streptococcus gordonii strain NCTC10231]
MNKLKKLRVKAFTLVEMLVVLLIISVLMLLFVPNLTKQKEAVSDTGNAAVVKVVESQAELYELKNTGDQATLSKLVAAGN
ISQKQADSYKAYYGKNNSETQAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1127999 FGL23_RS09540 WP_012130940.1 1986053..1986370(-) (comYC) [Streptococcus gordonii strain NCTC10231]
ATGAACAAATTAAAAAAATTACGTGTGAAAGCCTTTACTTTAGTGGAAATGTTAGTTGTCCTTCTGATCATCAGTGTCCT
TATGCTCTTATTTGTCCCTAATTTAACCAAGCAAAAAGAGGCAGTTTCGGATACTGGAAATGCTGCGGTGGTTAAGGTAG
TTGAGAGCCAGGCTGAGCTCTATGAACTCAAAAATACAGGAGATCAAGCAACCCTCAGCAAATTAGTCGCAGCTGGGAAC
ATTAGTCAAAAGCAAGCAGACTCTTACAAGGCTTATTATGGTAAGAACAATAGTGAGACTCAGGCAGTTGCCAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

100

100

1
  comYC Streptococcus mutans UA140

71.429

100

0.714
  comYC Streptococcus mutans UA159

71.429

100

0.714
  comGC/cglC Streptococcus mitis NCTC 12261

69.524

100

0.695
  comGC/cglC Streptococcus mitis SK321

68.932

98.095

0.676
  comGC/cglC Streptococcus pneumoniae Rx1

67.961

98.095

0.667
  comGC/cglC Streptococcus pneumoniae D39

67.961

98.095

0.667
  comGC/cglC Streptococcus pneumoniae TIGR4

67.961

98.095

0.667
  comGC/cglC Streptococcus pneumoniae R6

67.961

98.095

0.667
  comGC Lactococcus lactis subsp. cremoris KW2

59.794

92.381

0.552
  comYC Streptococcus suis isolate S10

61.798

84.762

0.524

Multiple sequence alignment