Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   FGL23_RS09515 Genome accession   NZ_LR594049
Coordinates   1983583..1984536 (-) Length   317 a.a.
NCBI ID   WP_061603430.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1978583..1989536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS09495 (NCTC10231_01899) - 1979248..1980579 (-) 1332 WP_061603462.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  FGL23_RS09500 (NCTC10231_01900) folP 1980584..1981549 (-) 966 WP_061603427.1 dihydropteroate synthase -
  FGL23_RS09505 (NCTC10231_01901) - 1981627..1982292 (-) 666 WP_061603428.1 CPBP family intramembrane glutamic endopeptidase -
  FGL23_RS09510 (NCTC10231_01902) - 1982340..1983533 (-) 1194 WP_061603429.1 acetate kinase -
  FGL23_RS09515 (NCTC10231_01903) comYH 1983583..1984536 (-) 954 WP_061603430.1 class I SAM-dependent methyltransferase Machinery gene
  FGL23_RS09520 (NCTC10231_01904) comGG 1984567..1984998 (-) 432 WP_231092517.1 competence type IV pilus minor pilin ComGG -
  FGL23_RS09525 (NCTC10231_01905) comGF/cglF 1984979..1985416 (-) 438 WP_061603431.1 competence type IV pilus minor pilin ComGF Machinery gene
  FGL23_RS09530 (NCTC10231_01906) comGE/cglE 1985400..1985693 (-) 294 WP_061597051.1 competence type IV pilus minor pilin ComGE Machinery gene
  FGL23_RS09535 (NCTC10231_01907) comYD 1985665..1986093 (-) 429 WP_081106361.1 competence type IV pilus minor pilin ComGD Machinery gene
  FGL23_RS09540 (NCTC10231_01908) comYC 1986053..1986370 (-) 318 WP_012130940.1 competence type IV pilus major pilin ComGC Machinery gene
  FGL23_RS09545 (NCTC10231_01909) comYB 1986367..1987401 (-) 1035 WP_061603433.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGL23_RS09550 (NCTC10231_01910) comYA 1987334..1988272 (-) 939 WP_061603434.1 competence type IV pilus ATPase ComGA Machinery gene
  FGL23_RS09555 (NCTC10231_01911) - 1988374..1988742 (-) 369 WP_061600994.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35986.08 Da        Isoelectric Point: 4.9691

>NTDB_id=1127995 FGL23_RS09515 WP_061603430.1 1983583..1984536(-) (comYH) [Streptococcus gordonii strain NCTC10231]
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQTDLEIVKKNHQTLKSLKLSREEWRRAYQFILMKASQT
EPLQANHQFTPDAIGFLLIFIIDQLMVASDITLLEMGSGTGNLAETILNNSRKEIDYLGLEIDDLLIDLSASIAEVMGSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKADGYAIFLAPNHLLTSPQ
SDLLKSWLKDNASLVAMIALPEKLFASASQAKTVFVLQKQKNIKAEPFAYALTDLQNHDEITRFRESFQKWRKVSEN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1127995 FGL23_RS09515 WP_061603430.1 1983583..1984536(-) (comYH) [Streptococcus gordonii strain NCTC10231]
ATGAATTTTGAAAAAATCGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTAATCGAGCAAAACGGTATCTATTTGGATGGACAAACGGACTTAGAAATTGTCAAAAAAAATCATC
AGACCTTGAAGAGCTTAAAGCTAAGCAGAGAAGAATGGCGGAGAGCCTATCAGTTCATTCTGATGAAGGCTTCTCAGACA
GAGCCTTTACAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGCTGATTTTCATCATTGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGGAGCGGAACCGGAAATCTTGCAGAGACAATCCTGAACAATAGTCGGAAAG
AGATTGATTATCTAGGATTAGAGATTGATGATTTACTGATTGACCTATCTGCCAGTATTGCAGAAGTGATGGGATCAAAA
GCCCATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATTATTAGTGATCTGCCTGTCGG
TTACTATCCGGATGATCAGATTGCCAGTCGCTACCAGGTAGCCAGTCAGACGGAGCACACCTATGCTCATCATCTATTGA
TGGAGCAGGCTTTAAAGTATTTGAAGGCCGATGGCTATGCTATCTTCTTAGCTCCTAATCACCTCTTAACCAGCCCGCAG
AGCGACTTACTTAAATCCTGGCTCAAAGACAATGCCAGCTTGGTTGCGATGATTGCTTTGCCAGAAAAACTCTTTGCATC
AGCCTCTCAGGCTAAGACGGTTTTTGTTTTACAAAAACAAAAAAATATAAAAGCAGAACCTTTTGCCTATGCATTGACAG
ATCTACAAAATCATGATGAAATTACTCGCTTTCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

58.786

98.738

0.58
  comYH Streptococcus mutans UA140

58.786

98.738

0.58

Multiple sequence alignment