Detailed information NTG1127998

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: FGL23_RS09535
• Genome accession: NZ_LR594049
• Coordinates: 1985665..1986093 (-)
• Length: 142 a.a.
• NCBI ID: WP_081106361.1
• Uniprot ID: -
• Organism: Streptococcus gordonii strain NCTC10231
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1980665..1991093

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGL23_RS09505 (NCTC10231_01901)	-	1981627..1982292 (-)	666	WP_061603428.1	CPBP family intramembrane glutamic endopeptidase	-
FGL23_RS09510 (NCTC10231_01902)	-	1982340..1983533 (-)	1194	WP_061603429.1	acetate kinase	-
FGL23_RS09515 (NCTC10231_01903)	comYH	1983583..1984536 (-)	954	WP_061603430.1	class I SAM-dependent methyltransferase	Machinery gene
FGL23_RS09520 (NCTC10231_01904)	comGG	1984567..1984998 (-)	432	WP_231092517.1	competence type IV pilus minor pilin ComGG	-
FGL23_RS09525 (NCTC10231_01905)	comGF/cglF	1984979..1985416 (-)	438	WP_061603431.1	competence type IV pilus minor pilin ComGF	Machinery gene
FGL23_RS09530 (NCTC10231_01906)	comGE/cglE	1985400..1985693 (-)	294	WP_061597051.1	competence type IV pilus minor pilin ComGE	Machinery gene
FGL23_RS09535 (NCTC10231_01907)	comYD	1985665..1986093 (-)	429	WP_081106361.1	competence type IV pilus minor pilin ComGD	Machinery gene
FGL23_RS09540 (NCTC10231_01908)	comYC	1986053..1986370 (-)	318	WP_012130940.1	competence type IV pilus major pilin ComGC	Machinery gene
FGL23_RS09545 (NCTC10231_01909)	comYB	1986367..1987401 (-)	1035	WP_061603433.1	competence type IV pilus assembly protein ComGB	Machinery gene
FGL23_RS09550 (NCTC10231_01910)	comYA	1987334..1988272 (-)	939	WP_061603434.1	competence type IV pilus ATPase ComGA	Machinery gene
FGL23_RS09555 (NCTC10231_01911)	-	1988374..1988742 (-)	369	WP_061600994.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15994.58 Da
• Isoelectric Point: 10.2817

>NTDB_id=1127998 FGL23_RS09535 WP_081106361.1 1985665..1986093(-) (comYD) [Streptococcus gordonii strain NCTC10231]
MVRTIVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRKLVLEISSQ
EISNGYARLPIPKGIQAPESTQINFDKAGGNSSLSKVQFQTKEGLVTYQLYIGNGKFKKTTN

Nucleotide

• Length: 429 bp

>NTDB_id=1127998 FGL23_RS09535 WP_081106361.1 1985665..1986093(-) (comYD) [Streptococcus gordonii strain NCTC10231]
ATGGTAAGAACAATAGTGAGACTCAGGCAGTTGCCAATTAAGGCCTTTACGGTTTTGGAAAGCCTCTTGGTCTTGATGAT
TAGCAGTTTTATCTTGCTGGCTCTATCAAGCTCTGTTCAAGCTACTTTTGAGCAGATTCAGGCAAAGATCTTCTTTTTAG
AATTTGAGCATTTTTATCAGGAAAGTCAGAAGCTTAGCGTATCTTCTCAGAGAAAGTTGGTGCTAGAAATATCCAGTCAA
GAGATTTCAAACGGTTATGCTCGTCTTCCAATTCCCAAAGGAATCCAAGCACCTGAATCTACACAGATCAATTTTGATAA
GGCTGGTGGTAATTCTTCACTCAGTAAAGTTCAGTTTCAAACCAAGGAAGGACTGGTGACCTATCAACTCTATATTGGAA
ATGGTAAATTTAAGAAAACGACAAATTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	99.296	100	0.993
comGD/cglD	Streptococcus pneumoniae TIGR4	59.055	89.437	0.528
comGD/cglD	Streptococcus mitis SK321	59.055	89.437	0.528
comGD/cglD	Streptococcus pneumoniae Rx1	59.055	89.437	0.528
comGD/cglD	Streptococcus pneumoniae D39	59.055	89.437	0.528
comGD/cglD	Streptococcus pneumoniae R6	59.055	89.437	0.528
comGD/cglD	Streptococcus mitis NCTC 12261	55.97	94.366	0.528
comYD	Streptococcus mutans UA140	50.388	90.845	0.458
comYD	Streptococcus mutans UA159	50.388	90.845	0.458
comGD	Lactococcus lactis subsp. cremoris KW2	36.879	99.296	0.366