Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE/cglE   Type   Machinery gene
Locus tag   FGL23_RS09530 Genome accession   NZ_LR594049
Coordinates   1985400..1985693 (-) Length   97 a.a.
NCBI ID   WP_061597051.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1980400..1990693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS09500 (NCTC10231_01900) folP 1980584..1981549 (-) 966 WP_061603427.1 dihydropteroate synthase -
  FGL23_RS09505 (NCTC10231_01901) - 1981627..1982292 (-) 666 WP_061603428.1 CPBP family intramembrane glutamic endopeptidase -
  FGL23_RS09510 (NCTC10231_01902) - 1982340..1983533 (-) 1194 WP_061603429.1 acetate kinase -
  FGL23_RS09515 (NCTC10231_01903) comYH 1983583..1984536 (-) 954 WP_061603430.1 class I SAM-dependent methyltransferase Machinery gene
  FGL23_RS09520 (NCTC10231_01904) comGG 1984567..1984998 (-) 432 WP_231092517.1 competence type IV pilus minor pilin ComGG -
  FGL23_RS09525 (NCTC10231_01905) comGF/cglF 1984979..1985416 (-) 438 WP_061603431.1 competence type IV pilus minor pilin ComGF Machinery gene
  FGL23_RS09530 (NCTC10231_01906) comGE/cglE 1985400..1985693 (-) 294 WP_061597051.1 competence type IV pilus minor pilin ComGE Machinery gene
  FGL23_RS09535 (NCTC10231_01907) comYD 1985665..1986093 (-) 429 WP_081106361.1 competence type IV pilus minor pilin ComGD Machinery gene
  FGL23_RS09540 (NCTC10231_01908) comYC 1986053..1986370 (-) 318 WP_012130940.1 competence type IV pilus major pilin ComGC Machinery gene
  FGL23_RS09545 (NCTC10231_01909) comYB 1986367..1987401 (-) 1035 WP_061603433.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGL23_RS09550 (NCTC10231_01910) comYA 1987334..1988272 (-) 939 WP_061603434.1 competence type IV pilus ATPase ComGA Machinery gene
  FGL23_RS09555 (NCTC10231_01911) - 1988374..1988742 (-) 369 WP_061600994.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10953.93 Da        Isoelectric Point: 10.4748

>NTDB_id=1127997 FGL23_RS09530 WP_061597051.1 1985400..1985693(-) (comGE/cglE) [Streptococcus gordonii strain NCTC10231]
MVNLRKRQIKGTILLEALLALGVFAVIASLLLGQITQSRKEAAVILQKEEVLRVAQMALQTGQDHLSLNGIEIRIQRTKD
QIRVFHQGEELIDVEKR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1127997 FGL23_RS09530 WP_061597051.1 1985400..1985693(-) (comGE/cglE) [Streptococcus gordonii strain NCTC10231]
ATGGTAAATTTAAGAAAACGACAAATTAAAGGGACCATCTTACTGGAAGCCTTACTAGCTTTGGGAGTTTTTGCTGTAAT
TGCAAGTTTGCTACTAGGTCAAATCACGCAATCACGCAAAGAAGCAGCTGTCATTTTACAAAAAGAAGAGGTCCTGCGGG
TGGCCCAAATGGCCCTCCAAACAGGGCAGGACCATCTTTCCTTAAATGGCATTGAAATTCGGATTCAGAGAACAAAGGAT
CAGATTCGAGTATTCCATCAGGGGGAGGAATTGATTGATGTTGAAAAAAGGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE/cglE Streptococcus pneumoniae Rx1

54.839

95.876

0.526
  comGE/cglE Streptococcus pneumoniae D39

54.839

95.876

0.526
  comGE/cglE Streptococcus pneumoniae R6

54.839

95.876

0.526
  comGE/cglE Streptococcus pneumoniae TIGR4

54.839

95.876

0.526
  comGE/cglE Streptococcus mitis NCTC 12261

52.688

95.876

0.505
  comGE/cglE Streptococcus mitis SK321

52.688

95.876

0.505
  comYE Streptococcus mutans UA140

43.299

100

0.433
  comYE Streptococcus mutans UA159

43.299

100

0.433

Multiple sequence alignment