Detailed information    

insolico Bioinformatically predicted

Overview


Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   FGK94_RS07430 Genome accession   NZ_LR590471
Coordinates   1579649..1580134 (+) Length   161 a.a.
NCBI ID   WP_138083090.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11854     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1574649..1585134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK94_RS07430 (NCTC11854_01522) comX/sigX/comX2/sigX2 1579649..1580134 (+) 486 WP_138083090.1 competence protein ComX Regulator
  FGK94_RS07435 (NCTC11854_01523) - 1580579..1581943 (-) 1365 WP_138083092.1 aspartate kinase -
  FGK94_RS07440 (NCTC11854_01524) truA 1582130..1582879 (+) 750 WP_138083094.1 tRNA pseudouridine(38-40) synthase TruA -
  FGK94_RS07445 (NCTC11854_01525) - 1582869..1583618 (+) 750 WP_138083096.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FGK94_RS07450 (NCTC11854_01526) - 1583624..1584097 (+) 474 WP_080312442.1 ECF transporter S component -
  FGK94_RS07455 (NCTC11854_01527) - 1584110..1584670 (+) 561 WP_043030157.1 TIGR01440 family protein -

Sequence


Protein


Download         Length: 161 a.a.        Molecular weight: 19401.42 Da        Isoelectric Point: 7.3119

>NTDB_id=1126890 FGK94_RS07430 WP_138083090.1 1579649..1580134(+) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
MTDDLVRLFDKIKPIIMKLRRHYYIQLWELDDWLQEGRLILYRLLVTYPELIEDEEKLYRYFKTKFSSYLKDVLRQQESQ
KRRFHKMAYEEIGSVGHAIPAGGLGVDDYVAYQLIVKEVEEQLTESELLQFRALIRGERFEGRRALLRKIGPYFQDFTGE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=1126890 FGK94_RS07430 WP_138083090.1 1579649..1580134(+) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
ATGACTGATGATTTAGTGAGGTTGTTTGATAAGATCAAGCCTATTATTATGAAGCTAAGACGGCATTATTATATTCAGCT
GTGGGAGCTGGATGATTGGTTACAGGAGGGACGGTTGATCTTGTATCGGTTATTGGTCACTTATCCAGAATTGATAGAGG
ATGAGGAGAAGCTGTATCGTTATTTTAAGACCAAGTTTTCCTCTTATTTGAAGGACGTGTTGCGGCAGCAGGAGAGTCAG
AAGCGTCGGTTTCATAAGATGGCTTATGAGGAGATTGGGTCGGTAGGCCATGCGATACCAGCAGGTGGTTTGGGAGTAGA
TGATTATGTGGCTTATCAGTTGATTGTGAAGGAGGTTGAGGAGCAATTGACAGAGAGCGAGCTGTTACAGTTTAGGGCTT
TGATCAGGGGAGAGCGGTTTGAGGGGAGACGGGCCTTGCTTCGCAAGATAGGACCTTACTTTCAGGACTTTACTGGTGAG
AAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

68.125

99.379

0.677

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

68.125

99.379

0.677

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

68.125

99.379

0.677

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

68.125

99.379

0.677

  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

68.125

99.379

0.677

  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

68.125

99.379

0.677

  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

48.387

96.273

0.466

  comX/sigX Streptococcus mutans UA159

46.497

97.516

0.453

  comX Streptococcus sobrinus strain NIDR 6715-7

45.752

95.031

0.435

  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

40.667

93.168

0.379

  comX Streptococcus thermophilus LMD-9

39.216

95.031

0.373

  comX Streptococcus thermophilus LMG 18311

39.216

95.031

0.373

  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

39.735

93.789

0.373

  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

39.735

93.789

0.373

  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

39.333

93.168

0.366

  comX/comX2 Streptococcus pneumoniae Rx1

38.411

93.789

0.36

  comX/comX1 Streptococcus pneumoniae Rx1

38.411

93.789

0.36

  comX/comX2 Streptococcus pneumoniae D39

38.411

93.789

0.36

  comX/comX1 Streptococcus pneumoniae D39

38.411

93.789

0.36

  comX/comX2 Streptococcus pneumoniae R6

38.411

93.789

0.36

  comX/comX1 Streptococcus pneumoniae R6

38.411

93.789

0.36

  comX/comX1 Streptococcus pneumoniae TIGR4

38.411

93.789

0.36

  comX/comX2 Streptococcus pneumoniae TIGR4

38.411

93.789

0.36

  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

38.667

93.168

0.36


Multiple sequence alignment