Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   EL084_RS00155 Genome accession   NZ_LR134292
Coordinates   26446..26748 (+) Length   100 a.a.
NCBI ID   WP_003067906.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC10389     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 21446..31748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL084_RS00140 (NCTC10389_00031) - 24101..24469 (+) 369 WP_126439865.1 DUF1033 family protein -
  EL084_RS00145 (NCTC10389_00032) comYA 24538..25479 (+) 942 WP_126439866.1 competence type IV pilus ATPase ComGA Machinery gene
  EL084_RS00150 (NCTC10389_00033) comYB 25403..26446 (+) 1044 WP_164557721.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL084_RS00155 (NCTC10389_00034) comYC 26446..26748 (+) 303 WP_003067906.1 competence type IV pilus major pilin ComGC Machinery gene
  EL084_RS00160 (NCTC10389_00035) comGD 26723..27163 (+) 441 WP_003067905.1 competence type IV pilus minor pilin ComGD -
  EL084_RS00165 (NCTC10389_00036) comGE 27117..27410 (+) 294 WP_003067904.1 competence type IV pilus minor pilin ComGE -
  EL084_RS00170 (NCTC10389_00037) comYF 27394..27831 (+) 438 WP_003067903.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL084_RS00175 (NCTC10389_00038) comGG 27842..28153 (+) 312 WP_268921724.1 competence type IV pilus minor pilin ComGG -
  EL084_RS00180 (NCTC10389_00039) comYH 28207..29163 (+) 957 WP_115254812.1 class I SAM-dependent methyltransferase Machinery gene
  EL084_RS00185 (NCTC10389_00040) - 29217..30416 (+) 1200 WP_126439867.1 acetate kinase -
  EL084_RS00190 (NCTC10389_00041) - 30574..30771 (+) 198 WP_126439868.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11415.57 Da        Isoelectric Point: 10.0527

>NTDB_id=1120414 EL084_RS00155 WP_003067906.1 26446..26748(+) (comYC) [Streptococcus equinus strain NCTC10389]
MKKIWKKLRNKSVEAFTLVEMLIVLLIIGVLMLLFVPNLSKQKEAIHEKGDAAVVKVVESQKELYEVKTGKEATIKDLVK
EGYISQQQAQTYNEKAKPKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=1120414 EL084_RS00155 WP_003067906.1 26446..26748(+) (comYC) [Streptococcus equinus strain NCTC10389]
ATGAAAAAAATATGGAAAAAATTACGTAACAAATCTGTTGAAGCTTTCACACTTGTGGAGATGTTGATTGTCCTGTTAAT
TATCGGTGTCTTGATGCTTTTATTTGTACCGAATTTGAGTAAGCAAAAAGAGGCGATTCATGAAAAAGGTGATGCAGCTG
TTGTGAAAGTTGTCGAAAGTCAGAAAGAACTTTACGAAGTTAAAACAGGTAAAGAAGCAACTATTAAAGATTTGGTGAAA
GAAGGCTATATTTCACAACAACAAGCTCAAACGTACAATGAAAAAGCTAAACCTAAAGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

70.455

88

0.62
  comYC Streptococcus suis isolate S10

63.636

88

0.56
  comGC/cglC Streptococcus mitis SK321

59.574

94

0.56
  comGC/cglC Streptococcus pneumoniae D39

58.511

94

0.55
  comGC/cglC Streptococcus pneumoniae R6

58.511

94

0.55
  comGC/cglC Streptococcus pneumoniae Rx1

58.511

94

0.55
  comGC/cglC Streptococcus pneumoniae TIGR4

58.511

94

0.55
  comGC/cglC Streptococcus mitis NCTC 12261

58.511

94

0.55
  comYC Streptococcus mutans UA140

57.303

89

0.51
  comYC Streptococcus mutans UA159

57.303

89

0.51
  comGC Lactococcus lactis subsp. cremoris KW2

50

90

0.45
  comGC Staphylococcus aureus MW2

45.57

79

0.36
  comGC Staphylococcus aureus N315

45.57

79

0.36

Multiple sequence alignment