Detailed information NTG1120415

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: EL084_RS00170
• Genome accession: NZ_LR134292
• Coordinates: 27394..27831 (+)
• Length: 145 a.a.
• NCBI ID: WP_003067903.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain NCTC10389
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 22394..32831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL084_RS00140 (NCTC10389_00031)	-	24101..24469 (+)	369	WP_126439865.1	DUF1033 family protein	-
EL084_RS00145 (NCTC10389_00032)	comYA	24538..25479 (+)	942	WP_126439866.1	competence type IV pilus ATPase ComGA	Machinery gene
EL084_RS00150 (NCTC10389_00033)	comYB	25403..26446 (+)	1044	WP_164557721.1	competence type IV pilus assembly protein ComGB	Machinery gene
EL084_RS00155 (NCTC10389_00034)	comYC	26446..26748 (+)	303	WP_003067906.1	competence type IV pilus major pilin ComGC	Machinery gene
EL084_RS00160 (NCTC10389_00035)	comGD	26723..27163 (+)	441	WP_003067905.1	competence type IV pilus minor pilin ComGD	-
EL084_RS00165 (NCTC10389_00036)	comGE	27117..27410 (+)	294	WP_003067904.1	competence type IV pilus minor pilin ComGE	-
EL084_RS00170 (NCTC10389_00037)	comYF	27394..27831 (+)	438	WP_003067903.1	competence type IV pilus minor pilin ComGF	Machinery gene
EL084_RS00175 (NCTC10389_00038)	comGG	27842..28153 (+)	312	WP_268921724.1	competence type IV pilus minor pilin ComGG	-
EL084_RS00180 (NCTC10389_00039)	comYH	28207..29163 (+)	957	WP_115254812.1	class I SAM-dependent methyltransferase	Machinery gene
EL084_RS00185 (NCTC10389_00040)	-	29217..30416 (+)	1200	WP_126439867.1	acetate kinase	-
EL084_RS00190 (NCTC10389_00041)	-	30574..30771 (+)	198	WP_126439868.1	helix-turn-helix transcriptional regulator	-
EL084_RS00200 (NCTC10389_00042)	-	31290..31925 (+)	636	WP_126439869.1	CPBP family intramembrane glutamic endopeptidase	-
EL084_RS00205 (NCTC10389_00043)	proC	31976..32746 (-)	771	WP_126439870.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16620.84 Da
• Isoelectric Point: 5.2435

>NTDB_id=1120415 EL084_RS00170 WP_003067903.1 27394..27831(+) (comYF) [Streptococcus equinus strain NCTC10389]
MLRRTRLKAFTLLESLVALLVISGTVLVYQGLTQSISQNVYYLSDNEENEWLLFSQQLRSELERCHLDCVSDNKLYVSKD
DKKLAYGLSKADDFRKTNASGQGYQPMLFGVNSSSIRQDGNNILIKLRMDNGMEREFVYTFDEAS

Nucleotide

• Length: 438 bp

>NTDB_id=1120415 EL084_RS00170 WP_003067903.1 27394..27831(+) (comYF) [Streptococcus equinus strain NCTC10389]
ATGTTAAGAAGAACTAGACTAAAGGCGTTTACGTTACTTGAAAGTTTGGTTGCTTTGCTGGTTATTTCAGGGACAGTTCT
GGTTTATCAAGGGCTAACGCAGTCAATTTCACAAAATGTTTATTACTTATCTGATAACGAAGAAAATGAGTGGCTTTTAT
TTTCTCAGCAGCTACGCTCAGAATTAGAACGATGCCACTTAGATTGTGTTTCTGACAATAAACTTTATGTTAGTAAGGAC
GATAAGAAATTAGCTTACGGGTTATCAAAAGCAGATGATTTTCGTAAAACAAATGCTTCTGGTCAAGGCTATCAGCCAAT
GTTATTTGGTGTTAATTCTTCTAGCATTCGTCAGGATGGTAATAATATTTTGATTAAGCTGCGAATGGATAATGGTATGG
AGAGAGAGTTTGTTTACACTTTTGATGAGGCAAGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (42-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	55.714	96.552	0.538
comYF	Streptococcus mutans UA159	55	96.552	0.531
comGF	Lactococcus lactis subsp. cremoris KW2	48.551	95.172	0.462
comGF/cglF	Streptococcus pneumoniae Rx1	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae D39	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae R6	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae TIGR4	47.101	95.172	0.448
comGF/cglF	Streptococcus mitis NCTC 12261	45.324	95.862	0.434
comGF/cglF	Streptococcus mitis SK321	44.604	95.862	0.428